Detailed information of deep learning profile BP000579.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000579.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BMN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 0.01 ]
C [ -0.00 -0.00 0.00 0.04 -0.00 0.23 -0.00 0.00 -0.00 0.27 0.24 -0.00 -0.00 0.00 -0.00 0.00 0.01 0.13 0.00 -0.00 0.00 0.00 ]
G [ 0.01 0.07 0.04 -0.00 0.08 -0.00 0.00 0.11 -0.00 -0.00 0.00 0.00 -0.00 0.11 0.20 0.00 0.02 0.00 0.00 0.07 0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.01 -0.00 0.18 -0.00 0.15 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.17 -0.01 -0.00 0.07 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 775 709 710 679 795 674 692 713 672 638 585 662 639 765 847 559 250 956 497 3 8 141 78 2 2 2016 944 204 13 33 680 205 204 553 1249 945 648 732 682 741 678 796 688 698 714 674 621 685 705 788 ]
C [ 797 793 818 735 698 766 694 733 726 697 790 807 960 802 348 123 601 1129 251 2934 8 490 21 2961 2934 201 228 37 16 47 709 2166 565 336 511 777 785 752 724 762 843 758 789 774 762 803 790 763 788 765 ]
G [ 773 773 734 800 819 818 875 913 702 975 765 839 713 693 996 1935 1687 83 1810 6 4 2301 138 1 2 319 406 2586 2926 34 1241 298 218 1620 833 688 854 753 736 759 732 690 789 732 801 789 750 801 719 700 ]
T [ 630 700 713 761 663 717 714 616 875 665 835 667 663 715 784 358 437 807 417 32 2955 43 2738 11 37 439 1397 148 20 2861 345 306 1988 466 382 565 688 738 833 713 722 731 709 771 698 709 814 726 763 722 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.01 0.02 -0.05 0.03 0.01 -0.06 -0.08 0.03 -0.02 -0.02 -0.10 0.09 0.02 0.01 -0.01 -0.05 0.05 -0.05 -0.07 0.00 0.07 0.03 0.00 -0.01 -0.00 ]
C [ 0.02 0.02 0.02 0.01 -0.04 0.04 0.11 -0.02 0.23 -0.04 0.04 -0.08 0.27 0.24 -0.02 0.04 0.01 -0.03 -0.02 0.05 0.15 0.04 -0.02 0.02 0.02 0.02 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.05 0.10 0.08 -0.09 0.14 -0.08 0.01 0.15 0.02 -0.12 0.01 0.08 0.02 0.12 0.20 -0.04 0.05 0.02 0.01 0.09 0.02 -0.01 0.02 0.01 0.01 ]
T [ -0.00 0.00 0.01 0.01 -0.01 0.03 0.03 -0.02 0.00 0.18 -0.09 0.17 -0.03 -0.02 -0.02 0.06 -0.03 -0.05 0.17 -0.04 -0.02 0.08 -0.01 -0.05 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2754

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1002

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 254

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 101

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages