JASPAR - REST - BP000578.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000578.1
Cell line/tissue:	PFSK-1
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BJP
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 1110

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.04	-0.00	-0.01	0.15	-0.00	-0.00	0.01	-0.01	-0.00	-0.00	0.15	-0.00	0.22	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	-0.00	0.00	0.03	-0.00	0.00	0.01	-0.00	0.15	0.10	-0.00	0.01	0.00	0.00	-0.00	0.13	0.00	-0.00	0.07	-0.00	0.05	0.06	0.01	]
G [	0.01	0.00	-0.00	0.00	0.10	0.00	0.00	0.00	0.00	0.00	-0.00	0.23	0.25	0.00	0.00	0.00	0.23	-0.00	0.04	0.00	-0.00	-0.00	]
T [	0.00	0.02	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.05	0.00	0.00	-0.00	-0.00	0.00	0.00	-0.00	0.01	-0.00	0.00	-0.00	]

Frequency matrix

A [	269	271	271	254	235	267	266	279	244	238	292	245	242	214	141	179	696	130	130	1079	7	36	527	104	9	1	1076	5	1110	6	176	220	135	115	281	274	222	255	307	239	299	212	234	254	254	270	271	247	218	240	]
C [	272	313	301	300	314	297	304	273	308	304	292	305	340	262	366	523	104	142	474	7	1084	1001	162	119	1	0	18	919	0	2	714	18	705	787	423	256	261	314	279	382	303	372	370	328	314	314	263	300	306	302	]
G [	311	298	300	308	304	299	306	303	313	306	285	301	307	347	221	168	233	749	242	15	12	16	82	49	1100	1109	0	143	0	1102	70	457	213	32	121	301	405	335	311	278	282	278	255	288	265	281	313	295	318	309	]
T [	258	228	238	248	257	247	234	255	245	262	241	259	221	287	382	240	77	89	264	9	7	57	339	838	0	0	16	43	0	0	150	415	57	176	285	279	222	206	213	211	226	248	251	240	277	245	263	268	268	259	]

Hypothetical CWM

A [	-0.00	0.01	0.00	0.00	-0.04	-0.01	0.06	-0.02	-0.03	0.15	-0.02	-0.04	0.05	-0.03	-0.03	-0.02	0.15	-0.12	0.22	0.02	-0.01	0.02	0.01	0.00	0.01	0.00	-0.00	-0.00	]
C [	0.01	0.01	0.01	-0.00	0.03	0.06	0.03	0.03	0.05	-0.06	0.15	0.11	0.01	0.08	-0.03	-0.11	0.01	0.16	-0.01	-0.07	0.11	-0.10	0.08	0.08	0.05	0.02	0.02	0.03	]
G [	0.03	0.03	0.02	0.03	0.02	0.01	0.03	0.12	0.04	0.00	-0.03	0.02	0.03	-0.03	0.23	0.25	-0.09	0.03	-0.06	0.23	-0.02	0.11	0.04	-0.05	0.01	0.02	0.02	0.01	]
T [	-0.00	-0.01	0.01	0.02	0.06	0.01	-0.05	-0.05	0.04	-0.04	-0.01	0.01	0.02	0.08	-0.10	-0.04	-0.02	0.02	-0.12	-0.10	0.01	0.04	-0.04	0.02	0.00	-0.00	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1540

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1206

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 394

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 52

CWM

PFM

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 23

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3