Detailed information of deep learning profile BP000578.1

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This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000578.1
Cell line/tissue: PFSK-1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.05 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 ]
C [ -0.00 -0.00 0.00 0.04 -0.00 0.23 0.00 0.00 0.00 0.25 0.23 -0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 -0.00 0.00 0.01 ]
G [ 0.01 0.06 0.05 -0.00 0.07 -0.00 0.00 0.13 -0.00 0.00 0.00 0.01 -0.00 0.10 0.15 -0.00 0.01 0.00 -0.00 0.03 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.22 -0.00 0.15 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.15 -0.01 -0.00 0.04 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 259 268 268 263 245 277 240 251 248 226 211 213 206 222 279 285 176 57 415 150 0 0 43 16 0 0 838 339 57 7 9 264 89 77 240 382 287 221 259 241 262 245 255 234 247 257 248 238 228 258 ]
C [ 309 318 295 313 281 265 288 255 278 282 278 311 335 405 301 121 32 213 457 70 1102 0 143 0 1109 1100 49 82 16 12 15 242 749 233 168 221 347 307 301 285 306 313 303 306 299 304 308 300 298 311 ]
G [ 302 306 300 263 314 314 328 370 372 303 382 279 314 261 256 423 787 705 18 714 2 0 919 18 0 1 119 162 1001 1084 7 474 142 104 523 366 262 340 305 292 304 308 273 304 297 314 300 301 313 272 ]
T [ 240 218 247 271 270 254 254 234 212 299 239 307 255 222 274 281 115 135 220 176 6 1110 5 1076 1 9 104 527 36 7 1079 130 130 696 179 141 214 242 245 292 238 244 279 266 267 235 254 271 271 269 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.00 0.00 0.02 -0.04 0.04 0.01 -0.10 -0.12 0.02 -0.02 -0.04 -0.10 0.08 0.02 0.01 -0.01 -0.04 0.04 -0.05 -0.05 0.01 0.06 0.02 0.01 -0.01 -0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.05 0.04 0.11 -0.02 0.23 -0.06 0.03 -0.09 0.25 0.23 -0.03 0.03 0.02 -0.03 0.00 0.04 0.12 0.03 0.01 0.02 0.03 0.02 0.03 0.03 ]
G [ 0.03 0.02 0.02 0.05 0.08 0.08 -0.10 0.11 -0.07 -0.01 0.16 0.01 -0.11 -0.03 0.08 0.01 0.11 0.15 -0.06 0.05 0.03 0.03 0.06 0.03 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.00 0.01 0.00 0.01 0.02 -0.01 0.02 0.22 -0.12 0.15 -0.02 -0.03 -0.03 0.05 -0.04 -0.02 0.15 -0.03 -0.02 0.06 -0.01 -0.04 0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1540

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 23

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages