Detailed information of deep learning profile BP000578.1

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This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000578.1
Cell line/tissue: PFSK-1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.04 -0.00 -0.01 0.15 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 0.15 -0.00 0.22 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.03 -0.00 0.00 0.01 -0.00 0.15 0.10 -0.00 0.01 0.00 0.00 -0.00 0.13 0.00 -0.00 0.07 -0.00 0.05 0.06 0.01 ]
G [ 0.01 0.00 -0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 -0.00 0.23 0.25 0.00 0.00 0.00 0.23 -0.00 0.04 0.00 -0.00 -0.00 ]
T [ 0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 269 271 271 254 235 267 266 279 244 238 292 245 242 214 141 179 696 130 130 1079 7 36 527 104 9 1 1076 5 1110 6 176 220 135 115 281 274 222 255 307 239 299 212 234 254 254 270 271 247 218 240 ]
C [ 272 313 301 300 314 297 304 273 308 304 292 305 340 262 366 523 104 142 474 7 1084 1001 162 119 1 0 18 919 0 2 714 18 705 787 423 256 261 314 279 382 303 372 370 328 314 314 263 300 306 302 ]
G [ 311 298 300 308 304 299 306 303 313 306 285 301 307 347 221 168 233 749 242 15 12 16 82 49 1100 1109 0 143 0 1102 70 457 213 32 121 301 405 335 311 278 282 278 255 288 265 281 313 295 318 309 ]
T [ 258 228 238 248 257 247 234 255 245 262 241 259 221 287 382 240 77 89 264 9 7 57 339 838 0 0 16 43 0 0 150 415 57 176 285 279 222 206 213 211 226 248 251 240 277 245 263 268 268 259 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 0.00 -0.04 -0.01 0.06 -0.02 -0.03 0.15 -0.02 -0.04 0.05 -0.03 -0.03 -0.02 0.15 -0.12 0.22 0.02 -0.01 0.02 0.01 0.00 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.03 0.06 0.03 0.03 0.05 -0.06 0.15 0.11 0.01 0.08 -0.03 -0.11 0.01 0.16 -0.01 -0.07 0.11 -0.10 0.08 0.08 0.05 0.02 0.02 0.03 ]
G [ 0.03 0.03 0.02 0.03 0.02 0.01 0.03 0.12 0.04 0.00 -0.03 0.02 0.03 -0.03 0.23 0.25 -0.09 0.03 -0.06 0.23 -0.02 0.11 0.04 -0.05 0.01 0.02 0.02 0.01 ]
T [ -0.00 -0.01 0.01 0.02 0.06 0.01 -0.05 -0.05 0.04 -0.04 -0.01 0.01 0.02 0.08 -0.10 -0.04 -0.02 0.02 -0.12 -0.10 0.01 0.04 -0.04 0.02 0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1540

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 23

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages