Detailed information of deep learning profile BP000576.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000576.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 0.10 -0.00 -0.01 0.20 -0.00 -0.00 0.03 -0.01 -0.00 -0.00 0.14 -0.00 0.18 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 ]
C [ 0.01 0.00 0.00 -0.00 0.01 0.16 0.00 0.00 0.07 0.00 0.27 0.18 -0.00 0.02 0.00 0.00 -0.00 0.16 0.00 0.00 0.09 -0.00 0.06 0.07 0.02 ]
G [ 0.01 0.01 0.01 0.01 0.00 -0.00 0.00 0.26 0.01 0.00 0.00 0.00 0.00 -0.01 0.26 0.30 0.00 0.00 0.00 0.26 -0.00 0.06 0.01 -0.00 -0.00 ]
T [ -0.01 -0.01 -0.00 0.03 0.10 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.01 0.03 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.01 -0.00 -0.01 ]

Frequency matrix

       
A [ 408 400 432 433 386 433 448 421 419 365 395 418 426 336 240 68 76 1591 30 117 1696 12 49 992 298 52 48 1476 23 1648 72 281 412 267 208 489 447 387 359 438 337 416 290 320 352 380 407 393 337 316 ]
C [ 442 481 475 460 487 469 434 456 424 443 472 423 371 429 221 303 1489 32 41 1067 20 1719 1573 211 367 29 16 143 1364 25 36 961 62 982 1167 635 456 417 540 481 615 511 600 547 537 483 500 486 474 520 ]
G [ 504 495 500 529 549 510 533 501 467 546 480 504 553 514 378 164 66 88 1653 372 14 8 22 172 163 1649 1657 41 240 39 1615 229 763 359 70 221 488 648 536 526 421 457 451 471 470 457 464 485 530 504 ]
T [ 392 370 339 324 324 334 331 368 436 392 399 401 396 467 907 1211 115 35 22 190 16 7 102 371 918 16 25 86 119 34 23 275 509 138 301 401 355 294 311 301 373 362 405 408 387 426 375 382 405 406 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.03 0.01 0.01 -0.09 -0.04 0.11 -0.03 -0.06 0.20 -0.03 -0.06 0.08 -0.02 -0.03 -0.05 0.17 -0.13 0.18 -0.01 -0.03 0.01 0.03 -0.00 0.01 0.00 -0.01 -0.01 ]
C [ 0.03 0.06 0.04 0.05 -0.03 0.07 0.18 0.10 0.01 0.13 -0.06 0.27 0.20 0.02 0.14 0.05 -0.11 0.03 0.22 0.07 -0.05 0.17 -0.11 0.11 0.11 0.08 0.06 0.05 0.06 ]
G [ 0.06 0.06 0.05 0.06 0.05 0.01 0.01 0.03 0.27 0.10 0.03 -0.02 0.01 0.11 -0.00 0.27 0.31 -0.06 0.08 -0.03 0.27 0.02 0.16 0.08 -0.03 0.04 0.04 0.04 0.04 ]
T [ -0.02 -0.01 -0.02 0.02 0.07 0.13 0.01 -0.08 -0.07 0.05 -0.02 -0.03 0.07 0.02 0.09 -0.09 0.01 0.01 0.03 -0.07 -0.05 0.01 0.07 -0.07 0.03 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 976

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages