Detailed information of deep learning profile BP000576.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000576.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 -0.00 -0.01 0.01 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.03 -0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.10 0.03 -0.00 -0.01 -0.01 ]
C [ -0.00 -0.00 0.01 0.06 -0.00 0.26 0.00 0.00 0.00 0.30 0.26 -0.01 0.00 0.00 0.00 0.00 0.01 0.26 0.00 -0.00 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.07 0.06 -0.00 0.09 0.00 0.00 0.16 -0.00 0.00 0.00 0.02 -0.00 0.18 0.27 0.00 0.07 0.00 0.00 0.16 0.01 -0.00 0.00 0.00 0.01 ]
T [ -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 0.18 -0.00 0.14 -0.00 -0.00 -0.01 0.03 -0.00 -0.00 0.20 -0.01 -0.00 0.10 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 ]

Frequency matrix

       
A [ 406 405 382 375 426 387 408 405 362 373 301 311 294 355 401 301 138 509 275 23 34 119 86 25 16 918 371 102 7 16 190 22 35 115 1211 907 467 396 401 399 392 436 368 331 334 324 324 339 370 392 ]
C [ 504 530 485 464 457 470 471 451 457 421 526 536 648 488 221 70 359 763 229 1615 39 240 41 1657 1649 163 172 22 8 14 372 1653 88 66 164 378 514 553 504 480 546 467 501 533 510 549 529 500 495 504 ]
G [ 520 474 486 500 483 537 547 600 511 615 481 540 417 456 635 1167 982 62 961 36 25 1364 143 16 29 367 211 1573 1719 20 1067 41 32 1489 303 221 429 371 423 472 443 424 456 434 469 487 460 475 481 442 ]
T [ 316 337 393 407 380 352 320 290 416 337 438 359 387 447 489 208 267 412 281 72 1648 23 1476 48 52 298 992 49 12 1696 117 30 1591 76 68 240 336 426 418 395 365 419 421 448 433 386 433 432 400 408 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 0.03 -0.07 0.07 0.01 -0.05 -0.07 0.03 0.01 0.01 -0.09 0.09 0.02 0.07 -0.03 -0.02 0.05 -0.07 -0.08 0.01 0.13 0.07 0.02 -0.02 -0.01 -0.02 ]
C [ 0.04 0.04 0.04 0.04 -0.03 0.08 0.16 0.02 0.27 -0.03 0.08 -0.06 0.31 0.27 -0.00 0.11 0.01 -0.02 0.03 0.10 0.27 0.03 0.01 0.01 0.05 0.06 0.05 0.06 0.06 ]
G [ 0.06 0.05 0.06 0.08 0.11 0.11 -0.11 0.17 -0.05 0.07 0.22 0.03 -0.11 0.05 0.14 0.02 0.20 0.27 -0.06 0.13 0.01 0.10 0.18 0.07 -0.03 0.05 0.04 0.06 0.03 ]
T [ -0.01 -0.01 0.00 0.01 -0.00 0.03 0.01 -0.03 -0.01 0.18 -0.13 0.17 -0.05 -0.03 -0.02 0.08 -0.06 -0.03 0.20 -0.06 -0.03 0.11 -0.04 -0.09 0.01 0.01 0.03 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 976

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages