JASPAR - REST - BP000574.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for REST in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	REST
Model ID:	BP000574.1
Cell line/tissue:	H1
Class:	C2H2 zinc finger factors
Family:	Factors with multiple dispersed zinc fingers
JASPAR ID:	MA0138.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q13127
Source:	ENCSR000BHM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 3671

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	-0.00	-0.00	0.15	-0.00	-0.01	0.28	-0.00	-0.00	0.02	-0.02	-0.00	-0.00	0.13	-0.00	0.19	-0.00	-0.01	0.00	0.00	-0.00	]
C [	0.00	-0.00	-0.00	0.00	0.16	0.00	-0.00	0.04	0.00	0.31	0.16	-0.00	0.01	-0.00	0.00	-0.00	0.11	0.00	-0.00	0.07	-0.00	0.04	0.06	]
G [	0.01	0.01	0.00	0.00	-0.00	0.00	0.25	0.01	-0.00	0.00	-0.00	-0.00	-0.01	0.25	0.28	-0.00	0.00	-0.00	0.21	-0.00	0.04	0.00	-0.00	]
T [	-0.00	0.00	0.03	0.09	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.04	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.01	0.01	-0.01	-0.00	]

Frequency matrix

A [	891	930	858	988	835	886	960	854	915	848	846	1017	968	830	579	196	256	3480	23	333	3651	2	99	1825	814	124	115	2999	134	3486	260	594	918	607	551	944	931	860	849	1041	786	1005	725	851	868	792	942	887	806	783	]
C [	873	850	1003	952	1044	987	859	976	817	889	947	833	782	914	567	737	3017	16	10	1831	4	3662	3268	541	595	9	8	381	2679	65	64	1703	227	1820	2147	1198	880	850	1072	914	1207	934	1111	1036	974	930	986	917	917	980	]
G [	972	960	972	949	1001	979	1027	983	967	1067	924	948	1004	979	848	474	117	148	3624	1017	8	4	33	301	384	3510	3540	116	614	58	3265	632	1631	835	287	542	1069	1248	1000	1014	893	945	929	935	1038	967	938	1052	1083	1000	]
T [	935	931	838	782	791	819	825	858	972	867	954	873	917	948	1677	2264	281	27	14	490	8	3	271	1004	1878	28	8	175	244	62	82	742	895	409	686	987	791	713	750	702	785	787	906	849	791	982	805	815	865	908	]

Hypothetical CWM

A [	0.00	0.02	0.00	0.00	-0.08	-0.02	0.15	-0.04	-0.05	0.28	-0.05	-0.03	0.08	-0.02	-0.02	0.00	0.16	-0.07	0.19	0.02	-0.02	0.03	0.03	-0.01	0.01	0.01	-0.00	-0.00	]
C [	0.03	0.02	0.02	-0.02	0.04	0.17	0.04	-0.00	0.10	-0.06	0.31	0.18	0.03	0.12	0.01	-0.12	0.04	0.15	0.01	-0.06	0.15	-0.08	0.08	0.09	0.05	0.04	0.03	0.03	]
G [	0.03	0.04	0.05	0.03	0.01	-0.05	0.03	0.26	0.07	-0.04	-0.04	0.00	0.05	-0.01	0.26	0.29	-0.06	0.06	-0.01	0.22	0.01	0.12	0.04	-0.03	0.02	0.02	0.02	0.02	]
T [	-0.00	-0.00	0.02	0.06	0.12	0.00	-0.13	-0.08	0.06	-0.06	-0.05	0.04	0.04	0.11	-0.06	-0.04	0.01	0.04	-0.08	-0.07	0.02	0.04	-0.04	0.02	-0.00	-0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6416

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1248

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 560

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 406

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 178

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 119

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 77

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 20

CWM

PFM

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000593.1	REST	ENCSR137ZMQ	K562	Homo sapiens	MA0138.3
BP000594.1	REST	ENCSR663WAR	H1	Homo sapiens	MA0138.3
BP000595.1	REST	ENCSR867WPH	liver	Homo sapiens	MA0138.3
BP000596.1	REST	ENCSR871KYB	GM23338	Homo sapiens	MA0138.3
BP000597.1	REST	ENCSR892DRK	A549	Homo sapiens	MA0138.3
BP000598.1	REST	ENCSR893QWP	liver	Homo sapiens	MA0138.3
BP000599.1	REST	ENCSR896UBV	HEK293	Homo sapiens	MA0138.3