Detailed information of deep learning profile BP000574.1

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This page shows detailed deep learning-derived predictions and motifs for REST in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000574.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BHM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 0.01 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.09 0.03 0.00 -0.00 ]
C [ -0.00 0.00 0.04 -0.00 0.21 -0.00 0.00 -0.00 0.28 0.25 -0.01 -0.00 -0.00 0.00 -0.00 0.01 0.25 0.00 -0.00 0.00 0.00 0.01 0.01 ]
G [ 0.06 0.04 -0.00 0.07 -0.00 0.00 0.11 -0.00 0.00 -0.00 0.01 -0.00 0.16 0.31 0.00 0.04 -0.00 0.00 0.16 0.00 -0.00 -0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.01 -0.00 0.19 -0.00 0.13 -0.00 -0.00 -0.02 0.02 -0.00 -0.00 0.28 -0.01 -0.00 0.15 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 908 865 815 805 982 791 849 906 787 785 702 750 713 791 987 686 409 895 742 82 62 244 175 8 28 1878 1004 271 3 8 490 14 27 281 2264 1677 948 917 873 954 867 972 858 825 819 791 782 838 931 935 ]
C [ 1000 1083 1052 938 967 1038 935 929 945 893 1014 1000 1248 1069 542 287 835 1631 632 3265 58 614 116 3540 3510 384 301 33 4 8 1017 3624 148 117 474 848 979 1004 948 924 1067 967 983 1027 979 1001 949 972 960 972 ]
G [ 980 917 917 986 930 974 1036 1111 934 1207 914 1072 850 880 1198 2147 1820 227 1703 64 65 2679 381 8 9 595 541 3268 3662 4 1831 10 16 3017 737 567 914 782 833 947 889 817 976 859 987 1044 952 1003 850 873 ]
T [ 783 806 887 942 792 868 851 725 1005 786 1041 849 860 931 944 551 607 918 594 260 3486 134 2999 115 124 814 1825 99 2 3651 333 23 3480 256 196 579 830 968 1017 846 848 915 854 960 886 835 988 858 930 891 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.02 -0.04 0.04 0.02 -0.07 -0.08 0.04 0.01 -0.04 -0.06 0.11 0.04 0.04 -0.05 -0.06 0.06 -0.08 -0.13 0.00 0.12 0.06 0.02 -0.00 -0.00 ]
C [ 0.02 0.02 0.02 0.02 -0.03 0.04 0.12 0.01 0.22 -0.01 0.06 -0.06 0.29 0.26 -0.01 0.05 0.00 -0.04 -0.04 0.07 0.26 0.03 -0.05 0.01 0.03 0.05 0.04 0.03 ]
G [ 0.03 0.03 0.04 0.05 0.09 0.08 -0.08 0.15 -0.06 0.01 0.15 0.04 -0.12 0.01 0.12 0.03 0.18 0.31 -0.06 0.10 -0.00 0.04 0.17 0.04 -0.02 0.02 0.02 0.03 ]
T [ -0.00 -0.00 0.01 0.01 -0.01 0.03 0.03 -0.02 0.02 0.19 -0.07 0.16 0.00 -0.02 -0.02 0.08 -0.03 -0.05 0.28 -0.05 -0.04 0.15 -0.02 -0.08 0.00 0.00 0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 560

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 77

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 20

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages