Detailed information of deep learning profile BP000573.1

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This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000573.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BGF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.11 -0.00 -0.01 0.21 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.13 -0.00 0.18 -0.00 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.11 0.00 0.00 0.04 0.00 0.23 0.13 -0.00 0.01 -0.00 -0.00 -0.00 0.12 0.00 -0.00 0.07 -0.00 0.04 0.06 0.01 ]
G [ 0.01 0.01 0.00 0.00 -0.00 0.00 0.19 0.01 0.00 0.00 0.00 0.00 -0.01 0.22 0.23 -0.00 0.00 -0.00 0.21 -0.00 0.05 0.01 -0.00 -0.00 ]
T [ -0.01 -0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.04 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 632 686 641 722 629 643 697 620 654 607 625 680 651 563 430 198 232 2244 117 234 2710 5 71 1425 487 71 34 2417 21 2725 73 408 657 386 312 738 666 597 584 733 546 720 476 562 601 570 655 618 587 533 ]
C [ 684 684 790 733 763 753 696 720 681 734 747 675 638 763 468 605 2004 103 153 1424 8 2729 2518 352 456 6 2 199 2202 8 11 1597 76 1573 1867 994 693 647 839 753 956 717 899 840 789 773 777 711 751 783 ]
G [ 756 760 764 738 800 776 776 786 722 801 710 737 798 761 668 374 209 312 2398 661 13 6 27 223 221 2660 2702 33 408 6 2647 293 1185 553 104 328 779 971 812 776 667 735 704 719 745 699 702 793 779 770 ]
T [ 673 615 550 552 553 573 576 619 688 603 663 653 658 658 1179 1568 300 86 77 426 14 5 129 745 1581 8 7 96 114 6 14 447 827 233 462 685 607 530 510 483 576 573 666 624 610 703 611 623 628 659 ]

Hypothetical CWM

   
A [ -0.01 0.02 0.01 0.01 -0.07 -0.02 0.12 -0.02 -0.07 0.21 -0.06 -0.04 0.06 -0.03 -0.02 -0.01 0.14 -0.11 0.18 0.00 -0.04 0.01 0.03 0.00 0.01 -0.00 -0.00 -0.01 ]
C [ 0.03 0.02 0.02 -0.02 0.04 0.13 0.02 0.00 0.09 -0.09 0.23 0.14 0.01 0.09 0.01 -0.12 0.03 0.15 0.03 -0.08 0.13 -0.11 0.07 0.08 0.05 0.03 0.02 0.03 ]
G [ 0.03 0.02 0.03 0.02 0.01 -0.03 0.03 0.20 0.06 -0.01 -0.03 -0.04 0.05 -0.03 0.22 0.23 -0.07 0.04 -0.05 0.22 -0.01 0.12 0.05 -0.06 0.01 0.01 0.02 0.02 ]
T [ -0.01 -0.01 0.01 0.04 0.09 -0.01 -0.11 -0.09 0.04 -0.05 -0.02 0.04 0.02 0.09 -0.09 -0.02 -0.01 0.02 -0.10 -0.07 0.01 0.05 -0.06 0.02 0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 746

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 193

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 24

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 20

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages