Detailed information of deep learning profile BP000562.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000562.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR299ILN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.07 0.08 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.01 0.01 -0.00 0.06 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.07 0.03 0.00 0.00 -0.00 0.00 0.00 0.00 0.02 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5480 5416 5415 5749 5955 5432 5540 5570 6660 5538 5776 5370 5685 5597 5491 6498 5873 5653 6506 5618 5797 9711 39 99 7724 3167 52 4576 20234 20457 551 7230 5282 4266 5324 5363 5046 5457 5654 6944 5536 5586 5419 5424 6516 6521 5454 5494 5468 5555 ]
C [ 4071 4020 4144 4616 4195 4998 4998 5197 4036 4247 4061 5231 4340 4022 4192 4370 4139 4339 3297 4874 2507 2753 59 77 146 4432 58 12759 234 4 5161 6442 4655 5676 4535 4025 5446 4441 5234 4064 4913 4097 4190 5342 4184 4182 4955 5093 4185 5177 ]
G [ 4427 5340 4312 4091 4545 4246 4285 4242 4356 5316 5099 4129 4043 5082 5340 4557 5371 4468 6239 5146 5718 7216 20 7514 7985 2400 20306 5 1 2 2580 2696 4025 3777 4594 5369 4671 4188 4114 4222 4330 4057 5280 4079 4258 4359 4294 4120 4139 4187 ]
T [ 6492 5694 6599 6014 5775 5794 5647 5461 5418 5369 5534 5740 6402 5769 5447 5045 5087 6010 4428 4832 6448 790 20352 12780 4615 10471 54 3130 1 7 12178 4102 6508 6751 6017 5713 5307 6384 5468 5240 5691 6730 5581 5625 5512 5408 5767 5763 6678 5551 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.02 -0.03 -0.04 0.02 -0.02 -0.01 0.01 0.07 0.08 -0.03 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 -0.00 0.00 -0.02 -0.04 -0.06 0.05 -0.02 0.04 0.01 -0.04 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 -0.04 0.03 0.03 -0.02 0.06 -0.07 -0.04 -0.03 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.03 0.07 0.05 0.01 0.01 -0.01 0.02 -0.05 -0.03 0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4679

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2903

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1728

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 32

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages