Detailed information of deep learning profile BP000561.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000561.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR269IUA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.03 0.07 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.07 -0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.07 0.07 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 6269 7427 6283 6489 6037 6074 6271 6245 7584 6401 5977 6159 7193 5938 6161 6780 7564 7222 4613 13536 15 2 3604 44 11570 5202 14446 22550 949 7128 5473 4885 6853 5574 5599 6038 6308 7145 6388 6046 6144 6069 6063 6424 6455 6426 6745 7506 6517 7314 ]
C [ 4560 4605 4599 4659 4757 4687 4527 5859 4505 4879 4692 4628 4600 4986 6037 5217 4058 4378 2949 2892 2 0 37 22607 2666 8758 8033 47 8000 6288 5686 6973 4877 5875 4978 5998 5705 4386 4378 5648 5791 4797 4716 4641 4624 4951 4475 4832 5814 4843 ]
G [ 5700 4618 5693 5544 4535 4661 5926 4671 4438 5344 4481 5784 4862 6225 4555 4868 6290 5151 7313 5628 7 474 14170 59 4936 245 103 111 3208 2805 5421 3629 4770 4763 4986 4647 4524 4733 5885 4531 4662 4409 5730 5536 5572 4584 5131 4454 4414 4511 ]
T [ 6220 6099 6174 6057 7420 7327 6025 5974 6222 6125 7599 6178 6094 5600 5996 5884 4837 5998 7874 693 22725 22273 4938 39 3577 8544 167 41 10592 6528 6169 7262 6249 6537 7186 6066 6212 6485 6098 6524 6152 7474 6240 6148 6098 6788 6398 5957 6004 6081 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 0.03 -0.03 -0.05 0.02 -0.01 0.01 0.01 0.05 0.07 -0.02 0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 -0.00 0.00 -0.03 -0.04 -0.07 0.07 -0.02 0.03 0.03 -0.04 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 -0.04 0.01 0.04 -0.02 0.05 -0.06 -0.04 -0.02 0.00 0.00 0.01 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.03 0.07 0.07 0.01 -0.01 -0.02 0.02 -0.04 -0.04 0.02 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4920

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 562

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 36

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages