Detailed information of deep learning profile BP000560.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000560.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR216GEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.08 0.08 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.03 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.01 0.01 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.08 0.04 0.00 0.00 -0.00 0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6097 6099 6063 6439 6719 6162 6185 6357 7570 6198 6516 6106 6525 6186 6145 7439 6670 6388 7370 6348 6555 10841 34 113 8518 3488 111 4928 22855 23041 566 8023 6027 4691 6005 5951 5574 6183 6282 7794 6204 6398 6061 6077 7404 7427 6140 6197 6183 6248 ]
C [ 4564 4444 4671 5254 4738 5649 5807 5984 4413 4703 4555 6062 4813 4562 4724 4994 4698 4849 3658 5617 2801 3106 75 70 200 5234 73 14671 199 4 5828 7504 5164 6564 4989 4606 6417 4910 6019 4530 5681 4501 4745 6138 4723 4690 5760 5860 4631 5876 ]
G [ 4872 6020 4755 4561 5108 4721 4716 4695 4995 5982 5925 4513 4435 5885 6135 5076 6081 4942 7162 5661 6435 8295 33 8568 9134 2676 22811 17 2 4 2824 3024 4498 4072 5261 6197 5139 4718 4638 4763 4852 4515 6007 4557 4706 4891 4750 4639 4576 4718 ]
T [ 7525 6495 7569 6804 6493 6526 6350 6022 6080 6175 6062 6377 7285 6425 6054 5549 5609 6879 4868 5432 7267 816 22916 14307 5206 11660 63 3442 2 9 13840 4507 7369 7731 6803 6304 5928 7247 6119 5971 6321 7644 6245 6286 6225 6050 6408 6362 7668 6216 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 0.03 -0.04 -0.05 0.02 -0.02 -0.01 0.01 0.08 0.08 -0.04 0.01 -0.00 -0.01 -0.00 ]
C [ 0.01 0.00 0.01 -0.00 0.00 -0.03 -0.05 -0.07 0.06 -0.03 0.05 0.01 -0.04 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 -0.04 0.03 0.03 -0.02 0.07 -0.08 -0.05 -0.04 0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 0.01 -0.03 0.08 0.06 0.01 0.01 -0.02 0.02 -0.06 -0.04 0.03 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4655

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1585

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1416

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 34

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages