Detailed information of deep learning profile BP000559.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000559.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR190VMK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.07 0.08 -0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.01 0.01 -0.00 0.07 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.07 0.04 0.00 0.00 -0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 6128 6088 6114 5962 6457 6791 6145 6194 6155 7712 6158 6474 6078 6537 6181 6107 7481 6573 6118 7331 6287 6701 10748 53 134 8684 3401 81 4878 22715 22925 675 7887 6252 4844 6026 6036 5530 6009 6178 7785 6132 6280 6055 6015 7467 7452 6122 6073 6037 ]
C [ 5317 4539 4331 4533 5159 4558 5705 5747 6082 4445 4624 4453 6104 4690 4430 4513 4915 4561 4860 3458 5469 2917 3212 89 86 167 5515 67 14518 235 5 5645 7602 5191 6495 4907 4429 6565 4880 6093 4558 5599 4502 4549 6148 4589 4480 5741 5991 4614 ]
G [ 4785 4842 6068 4761 4453 5106 4666 4601 4638 4719 6000 5963 4456 4344 5932 6142 4929 6213 4898 7248 5759 6215 8129 54 8082 8934 2660 22744 28 0 5 2769 2937 4206 3981 5305 6264 4957 4615 4547 4607 4866 4422 6103 4479 4656 4862 4675 4506 4473 ]
T [ 6721 7482 6438 7695 6882 6496 6435 6409 6076 6075 6169 6061 6313 7380 6408 6189 5626 5604 7075 4914 5436 7118 862 22755 14649 5166 11375 59 3527 1 16 13862 4525 7302 7631 6713 6222 5899 7447 6133 6001 6354 7747 6244 6309 6239 6157 6413 6381 7827 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.03 -0.04 -0.05 0.03 -0.02 -0.01 0.01 0.08 0.08 -0.04 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 -0.00 0.00 -0.02 -0.04 -0.07 0.06 -0.03 0.05 0.01 -0.04 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 -0.04 0.03 0.03 -0.02 0.07 -0.08 -0.04 -0.03 0.00 -0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.01 -0.03 0.07 0.06 0.02 0.01 -0.02 0.02 -0.06 -0.04 0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1018

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 454

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 293

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 240

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages