Detailed information of deep learning profile BP000558.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000558.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR182OZC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.06 0.06 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.01 0.01 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.06 0.03 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 2350 2404 2373 2442 2558 2354 2410 2414 2729 2384 2556 2422 2438 2427 2405 2694 2522 2513 2822 2432 2365 4103 7 50 3273 1471 21 2085 8659 8733 316 3133 2258 1839 2302 2344 2230 2424 2363 2904 2429 2432 2374 2348 2679 2738 2346 2392 2414 2488 ]
C [ 1736 1716 1807 1915 1832 2053 2025 2073 1802 1835 1825 2132 1859 1815 1923 1887 1845 1866 1422 1948 1169 1376 23 39 52 1677 21 5337 97 7 2159 2560 2023 2378 1878 1741 2153 1898 2106 1760 1960 1760 1888 2188 1816 1797 1980 2073 1826 2036 ]
G [ 1916 2108 1844 1791 1889 1844 1867 1864 1839 2171 2028 1680 1773 2028 2142 1912 2157 1918 2584 2299 2435 2924 9 3115 3357 1103 8690 9 1 6 1189 1201 1786 1606 1919 2146 2036 1824 1857 1803 1911 1767 2112 1738 1863 1810 1871 1833 1802 1767 ]
T [ 2755 2529 2733 2609 2478 2506 2455 2406 2387 2367 2348 2523 2687 2487 2287 2264 2233 2460 1929 2078 2788 354 8718 5553 2075 4506 25 1326 0 11 5093 1863 2690 2934 2658 2526 2338 2611 2431 2290 2457 2798 2383 2483 2399 2412 2560 2459 2715 2466 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.02 -0.03 -0.04 0.02 -0.02 -0.01 0.01 0.06 0.06 -0.03 0.01 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.02 -0.03 -0.05 0.04 -0.02 0.03 0.00 -0.03 0.02 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.02 -0.03 0.02 0.02 -0.02 0.05 -0.06 -0.04 -0.03 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.01 -0.03 0.06 0.04 0.01 0.00 -0.01 0.01 -0.04 -0.03 0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 43

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 31

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages