Detailed information of deep learning profile BP000557.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000557.1
Cell line/tissue: K562
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000EHE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 0.04 -0.00 0.00 0.00 -0.00 0.01 0.00 0.06 0.14 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.15 -0.00 0.03 0.02 -0.00 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.09 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 0.16 0.15 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.03 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 11455 7050 6807 6242 6583 6629 6853 10268 6677 5786 6171 10325 6130 6001 6713 9442 9322 3936 17684 2 0 2291 26 14770 3025 14231 26357 413 8044 5693 4808 10087 5646 5689 6796 7063 10273 6479 6108 6742 6015 6305 6789 7237 7082 7916 10710 6723 10154 7831 ]
C [ 4352 4310 5099 5626 4586 4595 8498 4339 4671 4313 4347 4417 4855 8891 7086 3731 4371 2771 2382 9 3 1 26373 2071 13224 12187 18 10680 6482 5686 10029 4734 9027 5049 9018 8728 4605 4584 8918 8750 5574 4585 4473 4775 6608 4577 4962 9065 5164 4953 ]
G [ 4624 8904 8150 4497 4828 9398 4572 4881 8909 5225 8980 5633 9970 4680 5535 8343 4916 10867 6153 0 233 21870 69 7048 122 36 70 2505 2573 8294 3541 5371 4650 5428 4591 4393 4592 9243 4166 4467 4402 8614 8528 8249 4627 7087 4800 4334 4856 7540 ]
T [ 6060 6227 6435 10126 10494 5869 6568 7003 6234 11167 6993 6116 5536 6919 7157 4975 7882 8917 272 26480 26255 2329 23 2602 10120 37 46 12893 9392 6818 8113 6299 7168 10325 6086 6307 7021 6185 7299 6532 10500 6987 6701 6230 8174 6911 6019 6369 6317 6167 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.01 0.07 -0.08 -0.10 0.04 -0.04 0.02 0.03 0.11 0.14 -0.06 0.02 0.00 -0.01 -0.00 ]
C [ 0.01 0.00 0.02 -0.01 0.00 -0.05 -0.08 -0.15 0.15 -0.04 0.05 0.05 -0.08 0.05 0.03 0.02 0.02 0.01 ]
G [ 0.01 0.02 0.02 0.03 0.05 -0.08 0.01 0.10 -0.04 0.13 -0.11 -0.08 -0.03 0.00 -0.01 0.01 0.00 0.01 ]
T [ -0.00 -0.01 0.00 0.03 -0.07 0.16 0.15 0.02 -0.00 -0.04 0.05 -0.09 -0.08 0.06 -0.01 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2375

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 936

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 595

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 246

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 219

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 132

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 63

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000544.1 CEBPB ENCSR000BQI HepG2 Homo sapiens MA0466.4
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages