Detailed information of deep learning profile BP000546.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000546.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000BRX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.01 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 55 63 56 54 50 47 52 46 42 55 51 44 39 49 45 58 41 46 87 1 2 28 0 78 18 163 178 7 51 57 29 35 57 59 58 56 37 52 55 55 41 41 55 51 61 53 61 43 49 55 ]
C [ 35 36 35 37 34 38 37 31 40 32 27 41 48 26 41 25 31 22 17 0 0 1 179 3 122 8 0 69 51 45 49 28 52 26 34 39 45 39 42 41 57 43 37 35 33 39 35 40 38 30 ]
G [ 37 47 44 38 41 40 40 45 48 42 34 50 46 43 47 43 47 52 71 0 2 115 0 84 5 1 1 14 19 38 34 68 19 47 44 28 35 44 30 31 36 42 29 41 35 37 35 39 41 33 ]
T [ 53 34 45 51 55 55 51 58 50 51 68 45 47 62 47 54 61 60 5 179 176 36 1 15 35 8 1 90 59 40 68 49 52 48 44 57 63 45 53 53 46 54 59 53 51 51 49 58 52 62 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.00 -0.01 0.01 -0.01 0.01 -0.00 -0.01 0.00 0.00 0.00 0.00 -0.00 ]
G [ -0.00 0.00 0.00 0.00 0.00 -0.01 -0.00 0.00 -0.01 0.01 -0.00 -0.00 -0.01 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 934

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 226

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 36

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000555.1 CEBPB ENCSR000EEX HepG2 Homo sapiens MA0466.4
BP000556.1 CEBPB ENCSR000EFM IMR-90 Homo sapiens MA0466.4
BP000557.1 CEBPB ENCSR000EHE K562 Homo sapiens MA0466.4
BP000558.1 CEBPB ENCSR182OZC A549 Homo sapiens MA0466.4
BP000559.1 CEBPB ENCSR190VMK A549 Homo sapiens MA0466.4
BP000560.1 CEBPB ENCSR216GEB A549 Homo sapiens MA0466.4
BP000561.1 CEBPB ENCSR269IUA A549 Homo sapiens MA0466.4
BP000562.1 CEBPB ENCSR299ILN A549 Homo sapiens MA0466.4
BP000563.1 CEBPB ENCSR375BUB A549 Homo sapiens MA0466.4
BP000564.1 CEBPB ENCSR416QLJ K562 Homo sapiens MA0466.4
Showing 10 profiles of page 2 from 3 pages