Detailed information of deep learning profile BP000543.1

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This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000543.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR952GOL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 0.01 0.05 0.00 0.03 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.06 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.04 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1022 1011 1052 1019 1066 1048 1033 1036 1059 1082 1096 1030 985 1002 1028 1197 1177 1973 75 1990 3790 3 3406 618 1148 864 922 90 363 925 529 658 873 967 915 1003 1014 1045 1096 1058 1121 1046 1048 1041 1017 1056 988 1098 1082 1060 ]
C [ 890 859 882 887 848 896 900 921 905 861 836 917 821 701 1068 1114 866 38 9 308 6 3801 18 935 716 1415 368 40 146 842 2569 1370 960 706 868 940 907 957 891 872 819 798 845 890 878 908 911 877 856 874 ]
G [ 846 868 841 870 871 872 845 801 840 806 874 849 919 1010 798 497 884 1284 3709 601 6 2 199 771 620 883 172 3685 124 699 81 167 788 831 844 810 860 848 819 834 871 954 830 861 831 820 846 843 870 830 ]
T [ 1069 1089 1052 1051 1042 1011 1049 1069 1023 1078 1021 1031 1102 1114 933 1019 900 532 34 928 25 21 204 1503 1343 665 2365 12 3194 1361 648 1632 1206 1323 1200 1074 1046 977 1021 1063 1016 1029 1104 1035 1101 1043 1082 1009 1019 1063 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 0.02 -0.01 0.01 0.05 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.02 -0.03 -0.01 -0.03 0.08 -0.03 0.01 0.00 0.01 0.02 -0.02 -0.02 -0.00 0.05 0.02 0.01 -0.00 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.02 0.06 -0.00 -0.02 -0.03 0.02 -0.00 -0.00 0.01 -0.03 0.07 -0.03 -0.00 -0.03 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 0.00 0.03 -0.04 0.05 0.01 -0.01 0.01 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2835

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 919

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 355

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 62

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 39

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages