Detailed information of deep learning profile BP000542.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000542.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR919OXR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.04 -0.00 0.01 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.06 0.01 0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 2648 2484 2556 2672 2590 2705 2603 2656 2580 2600 2663 2542 2543 2553 2668 2946 3042 3130 3936 1805 3566 7897 158 5580 1705 3375 3864 589 7 52 2347 53 1286 2199 2426 2304 2719 2600 2507 2690 2628 2518 2606 2604 2642 2743 2672 2588 2634 2687 ]
C [ 2082 2286 2132 2114 2146 2118 2187 2178 2278 2220 2135 2039 2051 1991 2051 2184 2343 1968 537 212 1686 403 8540 481 2155 1603 2110 413 1 22 1672 9369 3157 2221 1284 2107 2462 2348 2288 2080 2032 2041 2008 2070 2022 2105 2189 2172 2188 2092 ]
G [ 2110 2040 2084 2165 2136 2186 2148 2151 1981 1972 2073 2209 2372 2443 2224 2031 1717 2272 3475 6041 2241 460 323 1335 3348 1789 2114 48 9559 7 808 13 113 2266 2621 2564 1824 2009 2185 2008 2247 2340 2338 2236 2290 2110 2154 2210 2095 2169 ]
T [ 2727 2757 2795 2616 2695 2558 2629 2582 2728 2775 2696 2777 2601 2580 2624 2406 2465 2197 1619 1509 2074 807 546 2171 2359 2800 1479 8517 0 9486 4740 132 5011 2881 3236 2592 2562 2610 2587 2789 2660 2668 2615 2657 2613 2609 2552 2597 2650 2619 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 0.00 0.01 -0.00 0.01 0.05 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.04 -0.01 -0.03 0.07 -0.03 0.01 -0.00 -0.00 0.02 -0.03 -0.02 -0.00 0.06 0.02 0.01 -0.01 0.00 0.01 ]
G [ 0.00 0.00 -0.00 0.01 0.02 0.05 0.00 -0.01 -0.02 0.02 0.01 0.00 0.01 -0.04 0.08 -0.03 -0.01 -0.04 -0.02 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.06 0.01 -0.01 0.02 0.00 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4588

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2911

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2275

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1158

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 811

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 440

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 316

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 288

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 56

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 34

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 33

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 23

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages