Detailed information of deep learning profile BP000541.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000541.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR908AOO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 0.00 0.01 0.07 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.10 -0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 0.04 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.07 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.05 0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 3757 3835 3582 3657 3812 3732 3655 3787 3915 3890 4086 3677 3809 3682 3653 4923 4053 7664 129 6766 13767 0 12415 2223 4195 3549 3208 181 891 3010 1985 2448 3268 3466 3377 3703 3647 3664 4013 3899 3899 3811 3763 3766 3721 3763 3678 3938 3944 3822 ]
C [ 3156 3036 3276 3227 3013 3245 3301 3407 3375 3174 2902 3014 2964 2647 3661 3595 3518 175 4 1306 6 13882 33 2770 2537 4918 1572 194 537 3245 9174 5313 3135 2429 3101 3447 3528 3569 3266 3035 2952 2933 3084 3113 3162 3085 3190 3105 3077 3183 ]
G [ 3192 3249 3201 3237 3108 3081 3147 3017 2963 3060 3138 3515 3439 3690 3178 1879 3235 4193 13709 2489 29 1 818 3324 2363 3130 563 13496 320 2330 162 685 2883 3643 3250 2928 2920 2971 2919 3166 3150 3343 3351 3351 3110 3219 3094 3194 3240 3097 ]
T [ 3780 3765 3826 3764 3952 3827 3782 3674 3632 3761 3759 3679 3673 3866 3393 3488 3079 1853 43 3324 83 2 619 5568 4790 2288 8542 14 12137 5300 2564 5439 4599 4347 4157 3807 3790 3681 3687 3785 3884 3798 3687 3655 3892 3818 3923 3648 3624 3783 ]

Hypothetical CWM

A [ -0.00 0.00 0.01 -0.00 0.02 -0.00 0.02 0.07 -0.06 0.04 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.02 -0.05 -0.01 -0.04 0.10 -0.04 0.01 0.00 0.01 0.02 -0.02 -0.02 0.00 0.06 0.02 0.01 -0.01 0.00 0.01 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.07 0.00 -0.02 -0.02 0.03 0.00 -0.00 0.01 -0.04 0.09 -0.03 -0.01 -0.05 -0.01 0.01 0.01 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.06 0.06 0.01 -0.00 0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 10773

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3349

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2580

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1353

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 881

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 860

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 672

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 671

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 666

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 628

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 463

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 159

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 96

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 46

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 32

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 25

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages