Detailed information of deep learning profile BP000540.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000540.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR857QEA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 0.00 0.00 0.05 0.00 0.02 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.03 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.05 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.03 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

A [ 1657 1634 1658 1635 1629 1660 1658 1690 1686 1770 1668 1773 1650 1684 1486 1616 2170 1780 3467 59 3140 6278 0 5103 930 1796 1204 1091 155 445 1326 807 1008 1418 1573 1498 1677 1708 1676 1828 1711 1780 1701 1646 1789 1657 1656 1626 1710 1715 ]
C [ 1448 1479 1481 1523 1484 1475 1533 1572 1579 1567 1590 1419 1472 1344 1264 1850 1772 1828 91 2 627 2 6308 80 1516 1244 2630 596 77 253 1553 4442 2466 1617 1176 1552 1544 1587 1675 1501 1411 1400 1362 1503 1448 1499 1475 1502 1522 1495 ]
G [ 1510 1440 1453 1418 1469 1441 1401 1399 1375 1386 1387 1386 1533 1666 1886 1361 757 1374 1898 6249 1037 15 2 507 1250 1015 1461 200 6091 150 1048 62 318 1273 1531 1430 1339 1392 1336 1290 1477 1486 1527 1445 1445 1404 1464 1435 1417 1427 ]
T [ 1728 1790 1751 1767 1761 1767 1751 1682 1703 1620 1698 1765 1688 1649 1707 1516 1644 1361 887 33 1539 48 33 653 2647 2288 1048 4456 20 5495 2416 1032 2551 2035 2063 1863 1783 1656 1656 1724 1744 1677 1753 1749 1661 1783 1748 1780 1694 1706 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 0.01 -0.00 0.01 0.05 -0.04 0.03 -0.00 0.01 0.00 -0.01 -0.01 -0.01 0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.01 -0.01 -0.03 -0.01 -0.03 0.07 -0.03 0.01 0.00 0.01 0.02 -0.01 -0.01 0.00 0.04 0.01 0.00 -0.00 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.01 0.05 0.00 -0.01 -0.02 0.02 0.00 0.00 0.01 -0.02 0.06 -0.02 -0.00 -0.03 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.02 -0.04 0.04 0.01 -0.00 0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 11434

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4391

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3231

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1534

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1181

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 632

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 612

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 609

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 603

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 111

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 89

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 41

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 39

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 28

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 26

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 20

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages