Detailed information of deep learning profile BP000539.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000539.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR773NQB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.04 0.00 0.02 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.06 0.01 0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

A [ 2502 2355 2450 2553 2517 2553 2467 2523 2511 2467 2532 2413 2408 2411 2595 2806 2955 2978 3732 1857 3325 7564 8 5592 1568 3013 3462 493 3 83 2286 31 1356 2060 2372 2228 2587 2406 2408 2505 2509 2413 2472 2472 2434 2605 2540 2518 2509 2506 ]
C [ 2021 2147 2014 1997 2093 2051 2122 2142 2179 2126 2010 1881 1900 1960 1859 2041 2171 1834 514 195 1506 326 9056 490 2112 1651 2088 482 0 26 1615 8963 2892 2190 1300 1963 2364 2270 2129 1992 1967 1971 1908 2070 2022 2040 2080 2059 2136 2071 ]
G [ 2047 1974 2060 2088 2048 2046 2017 1981 1877 1881 1994 2157 2353 2283 2178 2065 1673 2206 3326 5577 2135 472 36 812 3127 1748 2146 34 9120 3 874 6 105 2174 2414 2470 1808 1965 2107 1976 2110 2195 2176 2142 2134 2024 2077 2111 2018 2066 ]
T [ 2554 2648 2600 2486 2466 2474 2518 2478 2557 2650 2588 2673 2463 2470 2492 2212 2325 2106 1552 1495 2158 762 24 2230 2317 2712 1428 8115 1 9012 4349 124 4771 2700 3038 2463 2365 2483 2480 2651 2538 2545 2568 2440 2534 2455 2427 2436 2461 2481 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 0.00 0.01 -0.00 0.01 0.05 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.00 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.04 -0.01 -0.03 0.07 -0.03 0.01 0.00 0.00 0.02 -0.03 -0.02 0.00 0.06 0.02 0.01 -0.01 0.00 0.01 ]
G [ 0.01 0.00 -0.00 0.01 0.02 0.05 0.00 -0.02 -0.02 0.02 0.01 0.00 0.01 -0.04 0.08 -0.04 -0.01 -0.04 -0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.00 -0.01 0.01 0.01 -0.00 0.03 -0.05 0.06 0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5874

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3093

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2463

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1600

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1077

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1076

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 560

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 414

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 295

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 36

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 20

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages