Detailed information of deep learning profile BP000535.1

  1. Home
  2. Deep Learning Profile > BP000535.1
This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000535.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR660RYY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 0.00 0.00 0.05 0.00 0.03 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 -0.00 0.04 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1060 1024 1087 1057 1054 1068 1064 1071 1093 1089 1120 1010 1081 1075 1048 1256 1098 1885 79 1731 3714 2 3457 698 1342 1207 915 95 280 853 555 607 867 1011 932 1050 1049 1043 1063 1094 1117 1085 1092 1054 1062 1076 1059 1108 1126 1105 ]
C [ 863 833 861 862 830 845 859 892 901 841 774 852 803 703 954 979 888 43 6 376 3 3822 12 835 614 1114 411 41 166 763 2555 1361 881 598 771 922 928 871 896 804 776 788 833 844 836 870 861 865 807 816 ]
G [ 882 880 893 861 898 846 879 843 819 834 859 968 932 997 882 592 986 1255 3705 739 31 0 181 1060 734 924 193 3680 142 627 74 172 855 954 948 840 843 904 857 866 926 937 877 916 818 863 858 905 905 897 ]
T [ 1029 1097 993 1054 1052 1075 1032 1028 1021 1070 1081 1004 1018 1059 950 1007 862 651 44 988 86 10 184 1241 1144 589 2315 18 3246 1591 650 1694 1231 1271 1183 1022 1014 1016 1018 1070 1015 1024 1032 1020 1118 1025 1056 956 996 1016 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 -0.01 0.01 0.05 -0.04 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 -0.00 -0.01 ]
C [ 0.00 0.01 0.00 -0.01 -0.04 -0.01 -0.04 0.08 -0.04 0.01 -0.00 0.00 0.02 -0.02 -0.02 -0.00 0.05 0.01 0.01 -0.01 0.00 ]
G [ 0.00 -0.01 0.01 0.01 0.05 -0.01 -0.02 -0.03 0.02 -0.00 -0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.04 -0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2616

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 361

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 39

CWM

PFM

     

HCWM

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages