Detailed information of deep learning profile BP000532.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000532.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR424JOE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 0.00 -0.00 0.00 0.04 -0.00 0.01 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.05 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.02 0.00 0.05 0.01 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

A [ 1146 1139 1115 1166 1152 1265 1158 1184 1183 1140 1200 1157 1082 1147 1179 1337 1396 1337 1819 708 1502 3509 72 2540 717 1563 1722 230 26 26 987 44 510 1013 1072 1087 1244 1209 1142 1188 1210 1100 1173 1162 1160 1249 1198 1165 1223 1222 ]
C [ 987 1010 958 974 946 926 985 976 995 1008 907 965 956 914 980 989 971 922 207 96 819 178 3869 236 982 637 923 201 4 5 729 4210 1604 1031 576 912 1124 1034 1006 964 902 955 951 932 941 939 989 940 999 935 ]
G [ 952 944 995 1013 975 1002 981 990 905 880 987 1026 1057 1090 1022 985 788 1068 1436 2860 961 194 130 571 1535 826 1002 16 4282 1 326 11 36 990 1277 1172 816 927 1018 932 975 1043 1039 999 1014 944 962 1006 968 987 ]
T [ 1234 1226 1251 1166 1246 1126 1195 1169 1236 1291 1225 1171 1224 1168 1138 1008 1164 992 857 655 1037 438 248 972 1085 1293 672 3872 7 4287 2277 54 2169 1285 1394 1148 1135 1149 1153 1235 1232 1221 1156 1226 1204 1187 1170 1208 1129 1175 ]

Hypothetical CWM

A [ -0.00 -0.00 0.00 -0.00 0.01 -0.01 0.01 0.04 -0.04 0.02 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.03 -0.01 -0.03 0.06 -0.03 0.01 -0.00 -0.00 0.02 -0.02 -0.02 -0.00 0.05 0.01 0.01 -0.01 0.00 0.01 ]
G [ 0.00 0.00 -0.00 0.01 0.01 0.04 -0.00 -0.02 -0.02 0.01 0.00 -0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.04 -0.02 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.00 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.01 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2954

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2459

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 954

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 722

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 459

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 149

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 122

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 37

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages