Detailed information of deep learning profile BP000439.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000439.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR967QUQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.07 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.18 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4420 3974 3836 5126 6387 4757 3939 4400 3855 4165 4740 4823 4965 5065 4415 2995 4402 5110 2214 955 12093 1679 3327 15264 392 7629 1385 367 560 3053 7848 1902 2883 6726 3451 5602 4314 4856 4472 4309 5028 6053 4156 4933 5280 5509 5152 5030 5043 4998 ]
C [ 4634 3817 5074 5862 4264 4069 3589 4971 7333 6555 5814 5322 5096 4699 5167 6356 4291 2520 14089 18037 1287 10192 7017 596 96 249 803 104 985 14032 1193 9685 6317 4641 4130 3821 3563 5124 6311 7188 6165 4090 5386 4695 4521 4478 4640 4724 4947 4899 ]
G [ 4917 6367 6145 3957 4662 4707 4460 4554 3429 3817 4477 4843 4646 4178 4911 3199 6299 8367 1690 318 3204 6909 1739 2134 18869 11417 11030 18810 16332 821 9328 5745 2189 5813 4995 4291 8014 5414 4870 3174 3361 5256 5306 5336 5058 4571 4508 5369 5187 5198 ]
T [ 5596 5409 4512 4622 4254 6034 7579 5642 4950 5030 4536 4579 4860 5625 5074 7017 4575 3570 1574 257 2983 787 7484 1573 210 272 6349 286 1690 1661 1198 2235 8178 2387 6991 5853 3676 4173 3914 4896 5013 4168 4719 4603 4708 5009 5267 4444 4390 4472 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.09 -0.04 0.05 -0.07 -0.05 -0.05 -0.02 0.02 -0.03 -0.03 0.03 -0.03 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.05 -0.00 0.13 0.19 -0.01 0.13 0.07 0.02 -0.01 -0.04 0.02 -0.04 -0.02 0.16 -0.01 0.08 0.06 0.04 0.02 0.01 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.10 0.06 -0.01 0.04 0.19 0.14 0.12 0.19 0.15 -0.02 0.15 0.06 0.00 0.04 0.03 0.00 0.05 0.02 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.06 0.07 -0.04 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 689

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 661

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 193

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages