Detailed information of deep learning profile BP000017.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in CD14-positive monocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000017.1
Cell line/tissue: CD14-positive monocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ATN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.09 0.06 0.19 0.12 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4013 3530 3372 4707 5933 4410 3520 4030 3341 3607 4147 4400 4522 4419 4029 2745 3876 4714 1870 751 10649 1429 2925 14053 312 6061 1556 400 724 2995 6293 1928 2730 5853 3138 4979 3778 4503 4073 3915 4425 5269 3849 4399 4620 4750 4545 4521 4411 4416 ]
C [ 4480 3578 4756 5659 4121 3871 3451 4504 7198 6292 5604 5100 4809 4484 4878 6108 4083 2329 13351 16680 1401 9342 6973 682 137 189 906 222 1317 12364 1542 9041 5667 4435 3878 3737 3704 5008 5660 6488 5689 4064 5061 4421 4367 4376 4424 4471 4764 4669 ]
G [ 4698 6165 6044 3698 4522 4476 4206 4393 3297 3633 4246 4439 4283 4037 4652 3027 5997 7779 1615 403 3208 6670 1892 2083 17473 11639 10386 17111 14625 1085 9171 5020 2319 5541 4891 4269 7407 4915 4821 3386 3557 4930 4982 5054 4960 4521 4639 5076 5033 5001 ]
T [ 4916 4834 3935 4043 3531 5350 6930 5180 4271 4575 4110 4168 4493 5167 4548 6227 4151 3285 1271 273 2849 666 6317 1289 185 218 5259 374 1441 1663 1101 2118 7391 2278 6200 5122 3218 3681 3553 4318 4436 3844 4215 4233 4160 4460 4499 4039 3899 4021 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.11 -0.07 0.06 -0.07 -0.05 -0.06 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.04 -0.01 0.14 0.20 -0.02 0.14 0.06 -0.01 -0.02 -0.07 -0.01 -0.05 -0.04 0.15 -0.03 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.02 -0.01 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.02 0.02 0.20 0.15 0.12 0.20 0.15 -0.03 0.15 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.03 -0.00 -0.02 -0.04 -0.09 -0.03 -0.07 0.07 -0.04 -0.04 -0.09 0.03 -0.05 0.01 -0.03 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 338

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 114

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages