Detailed information of deep learning profile BP000439.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000439.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR967QUQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.18 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.07 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4472 4390 4444 5267 5009 4708 4603 4719 4168 5013 4896 3914 4173 3676 5853 6991 2387 8178 2235 1198 1661 1690 286 6349 272 210 1573 7484 787 2983 257 1574 3570 4575 7017 5074 5625 4860 4579 4536 5030 4950 5642 7579 6034 4254 4622 4512 5409 5596 ]
C [ 5198 5187 5369 4508 4571 5058 5336 5306 5256 3361 3174 4870 5414 8014 4291 4995 5813 2189 5745 9328 821 16332 18810 11030 11417 18869 2134 1739 6909 3204 318 1690 8367 6299 3199 4911 4178 4646 4843 4477 3817 3429 4554 4460 4707 4662 3957 6145 6367 4917 ]
G [ 4899 4947 4724 4640 4478 4521 4695 5386 4090 6165 7188 6311 5124 3563 3821 4130 4641 6317 9685 1193 14032 985 104 803 249 96 596 7017 10192 1287 18037 14089 2520 4291 6356 5167 4699 5096 5322 5814 6555 7333 4971 3589 4069 4264 5862 5074 3817 4634 ]
T [ 4998 5043 5030 5152 5509 5280 4933 4156 6053 5028 4309 4472 4856 4314 5602 3451 6726 2883 1902 7848 3053 560 367 1385 7629 392 15264 3327 1679 12093 955 2214 5110 4402 2995 4415 5065 4965 4823 4740 4165 3855 4400 3939 4757 6387 5126 3836 3974 4420 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.04 0.07 -0.06 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.02 0.05 0.00 0.03 0.04 0.00 0.06 0.15 -0.02 0.15 0.19 0.12 0.14 0.19 0.04 -0.01 0.06 0.10 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.02 0.01 0.01 0.02 0.04 0.06 0.08 -0.01 0.16 -0.02 -0.04 0.02 -0.04 -0.01 0.02 0.07 0.13 -0.01 0.19 0.13 -0.00 0.05 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.03 0.03 -0.03 -0.03 0.02 -0.02 -0.05 -0.05 -0.07 0.05 -0.04 0.09 -0.02 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 689

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 661

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 193

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages