Detailed information of deep learning profile BP000438.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000438.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR967BSF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 0.00 -0.00 0.02 0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.10 0.14 0.03 0.06 0.14 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.06 0.00 0.14 0.09 -0.00 0.00 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.02 0.00 0.07 -0.00 -0.00 0.02 0.00 0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3 0 18 0 0 2 16 0 1 0 1 5 4 23 11 17 10 8 9 12 10 12 7 5 10 9 13 7 7 6 5 11 6 6 12 5 10 5 8 9 12 8 6 7 6 4 7 5 8 7 ]
C [ 27 30 12 18 30 0 0 9 5 0 0 8 17 0 5 2 4 9 7 2 4 4 6 4 6 4 3 1 4 4 1 4 4 4 3 4 8 5 9 4 3 3 6 4 9 5 10 9 7 8 ]
G [ 0 0 0 0 0 0 11 19 0 30 29 2 5 7 7 4 5 2 2 0 1 1 2 3 2 5 0 7 4 3 6 3 7 3 5 9 3 7 6 12 10 10 9 5 6 3 6 8 6 7 ]
T [ 0 0 0 12 0 28 3 2 24 0 0 15 4 0 7 7 11 11 12 16 15 13 15 18 12 12 14 15 15 17 18 12 13 17 10 12 9 13 7 5 5 9 9 14 9 18 7 8 9 8 ]

Hypothetical CWM

   
A [ 0.01 -0.04 0.02 -0.07 -0.03 -0.04 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.11 0.14 0.08 0.10 0.14 0.01 -0.01 0.04 0.07 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ -0.03 -0.04 0.00 -0.06 -0.00 0.01 0.04 0.09 -0.03 0.14 0.09 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.05 -0.03 -0.06 0.05 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 16423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 628

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 45

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000191.1 CTCF ENCSR240PRQ HCT116 Homo sapiens MA0139.2
BP000192.1 CTCF ENCSR243INX PC-9 Homo sapiens MA0139.2
BP000193.1 CTCF ENCSR244KEW middle frontal area 46 Homo sapiens MA0139.2
BP000194.1 CTCF ENCSR249JOH A549 Homo sapiens MA0139.2
BP000195.1 CTCF ENCSR251BHU middle frontal area 46 Homo sapiens MA0139.2
BP000196.1 CTCF ENCSR252QYR hepatocyte Homo sapiens MA0139.2
BP000197.1 CTCF ENCSR252XWG lower leg skin Homo sapiens MA0139.2
BP000198.1 CTCF ENCSR253ALG pancreas Homo sapiens MA0139.2
BP000199.1 CTCF ENCSR254YRM liver Homo sapiens MA0139.2
BP000200.1 CTCF ENCSR255SQR left lung Homo sapiens MA0139.2
Showing 10 profiles of page 20 from 45 pages