Detailed information of deep learning profile BP000438.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000438.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR967BSF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.01 0.00 0.00 0.02 -0.00 -0.00 0.07 0.00 0.02 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.14 0.00 0.06 0.01 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.14 0.06 0.03 0.14 0.10 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 0.00 -0.00 0.00 0.02 -0.00 0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 8 9 8 7 18 9 14 9 9 5 5 7 13 9 12 10 17 13 12 18 17 15 15 14 12 12 18 15 13 15 16 12 11 11 7 7 0 4 15 0 0 24 2 3 28 0 12 0 0 0 ]
C [ 7 6 8 6 3 6 5 9 10 10 12 6 7 3 9 5 3 7 3 6 3 4 7 0 5 2 3 2 1 1 0 2 2 5 4 7 7 5 2 29 30 0 19 11 0 0 0 0 0 0 ]
G [ 8 7 9 10 5 9 4 6 3 3 4 9 5 8 4 3 4 4 4 1 4 4 1 3 4 6 4 6 4 4 2 7 9 4 2 5 0 17 8 0 0 5 9 0 0 30 18 12 30 27 ]
T [ 7 8 5 7 4 6 7 6 8 12 9 8 5 10 5 12 6 6 11 5 6 7 7 13 9 10 5 7 12 10 12 9 8 10 17 11 23 4 5 1 0 1 0 16 2 0 0 18 0 3 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.05 0.05 -0.06 -0.03 -0.05 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.09 0.14 -0.03 0.09 0.04 0.01 -0.00 -0.06 0.00 -0.04 -0.03 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.07 0.04 -0.01 0.01 0.14 0.10 0.08 0.14 0.11 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.04 -0.03 -0.07 0.02 -0.04 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 16423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 628

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 45

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages