Detailed information of deep learning profile BP000199.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000199.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR254YRM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4288 4371 4280 4156 4210 5000 4723 4481 4397 4563 3867 4709 4697 3687 3954 3429 5573 6349 2219 7682 2110 1203 1760 1531 244 6611 209 135 1235 6723 677 2856 151 1357 3554 4424 6584 4896 5371 4736 4419 4230 4860 4654 5398 7410 5751 3848 4241 4217 ]
C [ 4573 4432 4576 4631 4733 4005 4001 4569 4692 4730 4531 3031 2789 4358 4682 7254 3728 4607 5077 1872 5167 8138 627 15399 17256 9193 10399 17391 1767 1516 6676 2266 186 1328 7167 5604 2814 4229 3601 3882 4109 3941 3291 2883 3993 3837 4090 4057 3422 5638 ]
G [ 4512 4315 4299 4367 4206 4062 4014 3961 4049 4681 3670 5392 6396 5653 4581 3173 3292 3559 4200 5641 8673 1090 12630 533 68 696 192 86 470 6743 9168 946 17006 13274 2089 3699 5599 4572 4213 4635 4840 5277 5835 6848 4293 3106 3535 3744 5277 4375 ]
T [ 4495 4750 4713 4714 4719 4801 5130 4857 4730 3894 5800 4736 3986 4170 4651 4012 5275 3353 6372 2673 1918 7437 2851 405 300 1368 7068 256 14396 2886 1347 11800 525 1909 5058 4141 2871 4171 4683 4615 4500 4420 3882 3483 4184 3515 4492 6219 4928 3638 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.02 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.07 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.10 -0.01 0.11 0.14 0.09 0.11 0.15 0.02 -0.01 0.05 0.06 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.10 -0.03 -0.03 -0.00 -0.07 -0.02 -0.01 0.04 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.01 0.02 -0.01 -0.04 -0.05 -0.05 0.05 -0.04 0.08 -0.02 -0.02 0.03 -0.02 -0.00 0.02 -0.02 -0.02 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 284

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages