Detailed information of deep learning profile BP000438.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000438.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR967BSF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 0.00 -0.00 0.02 0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.10 0.14 0.03 0.06 0.14 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.06 0.00 0.14 0.09 -0.00 0.00 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.02 0.00 0.07 -0.00 -0.00 0.02 0.00 0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 3 0 18 0 0 2 16 0 1 0 1 5 4 23 11 17 10 8 9 12 10 12 7 5 10 9 13 7 7 6 5 11 6 6 12 5 10 5 8 9 12 8 6 7 6 4 7 5 8 7 ]
C [ 27 30 12 18 30 0 0 9 5 0 0 8 17 0 5 2 4 9 7 2 4 4 6 4 6 4 3 1 4 4 1 4 4 4 3 4 8 5 9 4 3 3 6 4 9 5 10 9 7 8 ]
G [ 0 0 0 0 0 0 11 19 0 30 29 2 5 7 7 4 5 2 2 0 1 1 2 3 2 5 0 7 4 3 6 3 7 3 5 9 3 7 6 12 10 10 9 5 6 3 6 8 6 7 ]
T [ 0 0 0 12 0 28 3 2 24 0 0 15 4 0 7 7 11 11 12 16 15 13 15 18 12 12 14 15 15 17 18 12 13 17 10 12 9 13 7 5 5 9 9 14 9 18 7 8 9 8 ]

Hypothetical CWM

   
A [ 0.01 -0.04 0.02 -0.07 -0.03 -0.04 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.11 0.14 0.08 0.10 0.14 0.01 -0.01 0.04 0.07 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ -0.03 -0.04 0.00 -0.06 -0.00 0.01 0.04 0.09 -0.03 0.14 0.09 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.05 -0.03 -0.06 0.05 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 16423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 628

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 45

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages