Detailed information of deep learning profile BP000437.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000437.1
Cell line/tissue: nephron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR966OUM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4026 3804 3797 4343 4233 4065 4050 4127 3632 4197 4195 3446 3565 3214 5024 5825 2228 7007 2060 1291 1648 1389 248 5046 230 174 1234 6017 701 2977 242 1239 3215 4029 6006 4430 4902 4382 4098 3965 4311 4114 4980 7031 5133 3517 3910 3796 4830 4779 ]
C [ 4511 4500 4649 4096 4087 4581 4714 4653 4490 3414 3153 4619 4597 6832 3858 4556 5110 2012 4803 8146 795 14331 16340 9562 10691 16478 1717 1607 6524 2698 356 1429 7036 5455 2770 4269 3609 3970 4127 3768 3287 2860 4020 3768 4157 4004 3306 5688 5599 4353 ]
G [ 4222 4274 4185 4117 4166 3952 3945 4525 3835 5042 5909 5148 4410 3378 3399 3579 4032 5408 8309 1384 11615 757 119 774 171 84 518 6660 8319 1151 15643 12442 2194 3784 5619 4548 4122 4534 4708 5173 5881 6753 4125 2993 3514 3624 5281 4313 3247 4120 ]
T [ 4255 4436 4383 4458 4528 4416 4305 3709 5057 4361 3757 3801 4442 3590 4733 3054 5644 2587 1842 6193 2956 537 307 1632 5922 278 13545 2730 1470 10188 773 1904 4569 3746 2619 3767 4381 4128 4081 4108 3535 3287 3889 3222 4210 5869 4517 3217 3338 3762 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.12 -0.02 0.12 0.16 0.09 0.12 0.16 0.02 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.12 -0.03 -0.04 0.00 -0.06 -0.02 0.00 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.06 0.05 -0.05 0.09 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2005

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages