Detailed information of deep learning profile BP000437.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000437.1
Cell line/tissue: nephron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR966OUM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3762 3338 3217 4517 5869 4210 3222 3889 3287 3535 4108 4081 4128 4381 3767 2619 3746 4569 1904 773 10188 1470 2730 13545 278 5922 1632 307 537 2956 6193 1842 2587 5644 3054 4733 3590 4442 3801 3757 4361 5057 3709 4305 4416 4528 4458 4383 4436 4255 ]
C [ 4120 3247 4313 5281 3624 3514 2993 4125 6753 5881 5173 4708 4534 4122 4548 5619 3784 2194 12442 15643 1151 8319 6660 518 84 171 774 119 757 11615 1384 8309 5408 4032 3579 3399 3378 4410 5148 5909 5042 3835 4525 3945 3952 4166 4117 4185 4274 4222 ]
G [ 4353 5599 5688 3306 4004 4157 3768 4020 2860 3287 3768 4127 3970 3609 4269 2770 5455 7036 1429 356 2698 6524 1607 1717 16478 10691 9562 16340 14331 795 8146 4803 2012 5110 4556 3858 6832 4597 4619 3153 3414 4490 4653 4714 4581 4087 4096 4649 4500 4511 ]
T [ 4779 4830 3796 3910 3517 5133 7031 4980 4114 4311 3965 4098 4382 4902 4430 6006 4029 3215 1239 242 2977 701 6017 1234 174 230 5046 248 1389 1648 1291 2060 7007 2228 5825 5024 3214 3565 3446 4195 4197 3632 4127 4050 4065 4233 4343 3797 3804 4026 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.09 -0.05 0.05 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.11 0.05 0.00 -0.02 -0.06 0.00 -0.04 -0.03 0.12 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.16 0.12 0.09 0.16 0.12 -0.02 0.12 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2005

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages