Detailed information of deep learning profile BP000436.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000436.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR964BKO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4613 4491 4557 5409 5226 4929 4838 4995 4147 5130 5083 4050 4209 3772 5687 6759 2483 7996 2346 1301 2018 1739 510 6550 286 172 1113 7627 578 2746 159 1251 3609 4733 7571 5336 6167 5180 4767 4591 5294 4865 5988 8882 6403 3909 4596 4434 5691 5816 ]
C [ 5020 5055 5188 4472 4414 4872 5203 5102 5134 3276 3092 4760 5159 7825 4383 5121 5507 2335 5782 8743 1250 15582 18096 10757 11623 18946 1757 1507 6723 2666 168 1199 8231 6326 2762 4661 3844 4179 4386 4126 3259 2891 4269 4003 4535 4522 3345 6578 6704 4776 ]
G [ 4823 4877 4662 4394 4312 4434 4573 5184 3997 5944 7127 6064 5156 3518 3644 3890 4603 6183 9104 1644 12966 1344 397 871 208 110 484 7306 10975 978 18754 15242 2107 4122 6395 5075 4395 4992 5414 6064 6785 8116 4651 3036 3717 3916 6070 4896 3267 4528 ]
T [ 5058 5091 5107 5239 5562 5279 4900 4233 6236 5164 4212 4640 4990 4399 5800 3744 6921 3000 2282 7826 3280 849 511 1336 7397 286 16160 3074 1238 13124 433 1822 5567 4333 2786 4442 5108 5163 4947 4733 4176 3642 4606 3593 4859 7167 5503 3606 3852 4394 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.05 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.10 0.13 0.07 0.10 0.14 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.00 0.02 0.03 0.04 -0.02 0.09 -0.03 -0.03 0.01 -0.05 -0.01 0.00 0.04 0.09 -0.02 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.03 -0.04 -0.04 0.04 -0.04 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 133

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages