Detailed information of deep learning profile BP000436.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000436.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR964BKO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4394 3852 3606 5503 7167 4859 3593 4606 3642 4176 4733 4947 5163 5108 4442 2786 4333 5567 1822 433 13124 1238 3074 16160 286 7397 1336 511 849 3280 7826 2282 3000 6921 3744 5800 4399 4990 4640 4212 5164 6236 4233 4900 5279 5562 5239 5107 5091 5058 ]
C [ 4528 3267 4896 6070 3916 3717 3036 4651 8116 6785 6064 5414 4992 4395 5075 6395 4122 2107 15242 18754 978 10975 7306 484 110 208 871 397 1344 12966 1644 9104 6183 4603 3890 3644 3518 5156 6064 7127 5944 3997 5184 4573 4434 4312 4394 4662 4877 4823 ]
G [ 4776 6704 6578 3345 4522 4535 4003 4269 2891 3259 4126 4386 4179 3844 4661 2762 6326 8231 1199 168 2666 6723 1507 1757 18946 11623 10757 18096 15582 1250 8743 5782 2335 5507 5121 4383 7825 5159 4760 3092 3276 5134 5102 5203 4872 4414 4472 5188 5055 5020 ]
T [ 5816 5691 4434 4596 3909 6403 8882 5988 4865 5294 4591 4767 5180 6167 5336 7571 4733 3609 1251 159 2746 578 7627 1113 172 286 6550 510 1739 2018 1301 2346 7996 2483 6759 5687 3772 4209 4050 5083 5130 4147 4995 4838 4929 5226 5409 4557 4491 4613 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.04 0.04 -0.04 -0.04 -0.03 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.02 0.09 0.04 0.00 -0.01 -0.05 0.01 -0.03 -0.03 0.09 -0.02 0.04 0.03 0.02 0.00 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.14 0.10 0.07 0.13 0.10 -0.02 0.09 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.05 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 133

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages