Detailed information of deep learning profile BP000434.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Caco-2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000434.1
Cell line/tissue: Caco-2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR961IOA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.01 0.12 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.00 -0.00 0.10 0.19 -0.00 0.06 0.03 0.00 0.00 0.00 -0.00 0.00 0.00 0.11 -0.00 0.04 0.02 0.01 0.00 ]
G [ -0.00 -0.00 0.02 0.02 -0.00 -0.00 0.01 0.01 0.00 0.00 0.20 0.09 0.07 0.19 0.15 -0.00 0.08 0.01 -0.01 0.00 0.00 ]
T [ 0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.02 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3 8 9 11 4 6 7 7 6 7 8 4 5 6 7 12 3 6 6 13 4 3 8 8 5 5 13 4 0 3 3 2 2 26 3 5 35 2 13 1 0 0 4 11 1 7 11 5 8 10 ]
C [ 7 13 12 8 10 5 9 9 6 10 7 12 11 7 7 0 1 4 5 9 3 0 0 3 2 8 4 16 13 2 7 32 35 2 19 20 2 0 0 3 0 0 30 2 20 13 11 12 11 6 ]
G [ 15 12 10 15 14 18 14 18 19 17 18 17 16 14 18 23 30 22 23 13 23 33 25 24 25 17 6 9 1 27 24 1 1 8 16 1 1 36 25 25 36 38 2 22 11 6 14 12 10 15 ]
T [ 13 5 7 4 10 9 8 4 7 4 5 5 6 11 6 3 4 6 4 3 8 2 5 3 6 8 15 9 24 6 4 3 0 2 0 12 0 0 0 9 2 0 2 3 6 12 2 9 9 7 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.01 0.00 -0.03 -0.02 0.03 -0.01 -0.04 0.05 -0.03 -0.02 0.13 -0.07 0.07 -0.08 -0.07 -0.07 -0.00 0.03 -0.02 -0.02 0.04 -0.02 0.02 -0.00 ]
C [ 0.03 0.01 0.00 0.02 0.06 0.04 -0.02 0.12 0.19 -0.05 0.13 0.07 -0.02 -0.06 -0.12 -0.02 -0.07 -0.07 0.14 -0.04 0.07 0.05 0.04 0.01 0.01 0.01 ]
G [ -0.01 -0.00 0.00 0.01 -0.02 0.03 0.04 -0.06 -0.05 0.07 0.04 -0.04 0.02 0.20 0.14 0.10 0.20 0.15 -0.05 0.14 0.03 -0.02 0.02 0.02 -0.00 0.03 ]
T [ 0.01 0.01 0.01 0.01 0.04 -0.00 -0.01 -0.03 -0.09 -0.01 -0.07 0.08 -0.04 -0.06 -0.09 0.04 -0.06 0.01 -0.03 -0.07 -0.02 0.04 -0.04 0.04 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 269

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000431.1 CTCF ENCSR955BIB thyroid gland Homo sapiens MA0139.2
BP000432.1 CTCF ENCSR957UPE middle frontal area 46 Homo sapiens MA0139.2
BP000433.1 CTCF ENCSR960MDF ascending aorta Homo sapiens MA0139.2
BP000435.1 CTCF ENCSR961SKY spleen Homo sapiens MA0139.2
BP000436.1 CTCF ENCSR964BKO upper lobe of left lung Homo sapiens MA0139.2
BP000437.1 CTCF ENCSR966OUM nephron Homo sapiens MA0139.2
BP000438.1 CTCF ENCSR967BSF spleen Homo sapiens MA0139.2
BP000439.1 CTCF ENCSR967QUQ middle frontal area 46 Homo sapiens MA0139.2
BP000440.1 CTCF ENCSR970UZD upper lobe of left lung Homo sapiens MA0139.2
BP000441.1 CTCF ENCSR972LYL upper lobe of left lung Homo sapiens MA0139.2
Showing 10 profiles of page 44 from 45 pages