Detailed information of deep learning profile BP000441.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000441.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR972LYL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4354 4305 4433 5257 5068 4761 4721 4754 4094 4985 4921 3870 4052 3638 5578 6648 2320 7798 2149 1213 1925 1646 393 6497 244 158 1230 7399 608 2774 151 1295 3557 4645 7212 5154 5856 5019 4594 4485 5072 4801 5865 8288 6044 3921 4367 4277 5479 5546 ]
C [ 4953 5045 5118 4376 4281 4884 5173 5153 4965 3265 2959 4569 5163 7850 4248 5004 5437 2287 5843 8776 1160 15485 17917 10348 11325 18602 1873 1515 6599 2877 174 1260 8020 6178 2835 4616 3906 4246 4360 4213 3366 2982 4257 4007 4539 4471 3491 6333 6486 4823 ]
G [ 4850 4806 4605 4348 4361 4387 4408 5200 3977 5870 7116 6208 5112 3362 3579 3868 4639 6115 9061 1506 12875 1274 334 936 228 115 501 7170 10652 896 18192 14730 2172 3986 6295 5029 4348 4869 5284 5781 6559 7759 4633 3180 3732 3955 5933 4865 3356 4381 ]
T [ 4965 4966 4966 5141 5412 5090 4820 4015 6086 5002 4126 4475 4795 4272 5717 3602 6726 2922 2069 7627 3162 717 478 1341 7325 247 15518 3038 1263 12575 605 1837 5373 4313 2780 4323 5012 4988 4884 4643 4125 3580 4367 3647 4807 6775 5331 3647 3801 4372 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 0.00 -0.05 -0.02 -0.00 0.05 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 149

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages