Detailed information of deep learning profile BP000440.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000440.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR970UZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.06 0.09 0.03 0.04 0.11 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.01 -0.00 0.05 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3826 3811 3905 4816 4549 4267 4149 4210 3413 4391 4377 3369 3523 3155 5010 5891 2079 6874 1898 1081 1643 1446 501 5831 279 163 899 6596 460 2124 107 982 3116 4041 7031 4674 5518 4502 3905 3800 4621 4226 5373 8378 5780 3210 3936 3721 5139 5116 ]
C [ 4953 4975 5185 4294 4142 4734 5073 4927 5046 3101 2855 4325 4974 7640 4250 5084 5292 2504 5511 8585 1312 14290 16526 10026 11050 17428 1691 1415 5918 3026 157 1043 8040 6452 2592 4627 3604 3998 4313 3977 3039 2600 4102 3862 4408 4412 3026 6705 6693 4665 ]
G [ 4830 4748 4470 4334 4280 4353 4396 5269 3717 5937 7173 6104 5124 3406 3548 3856 4439 6027 8594 1556 12348 1476 477 1017 292 158 597 7251 10746 856 17383 14472 1956 3909 6157 4672 4180 4883 5353 5999 6961 8318 4478 2856 3508 3695 6184 4755 3082 4554 ]
T [ 4387 4462 4436 4552 5025 4642 4378 3590 5820 4567 3591 4198 4375 3795 5188 3165 6186 2591 1993 6774 2693 784 492 1122 6375 247 14809 2734 872 11990 349 1499 4884 3594 2216 4023 4694 4613 4425 4220 3375 2852 4043 2900 4300 6679 4850 2815 3082 3661 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.02 0.02 -0.01 -0.03 -0.01 0.00 -0.02 0.01 -0.05 -0.03 -0.03 0.04 -0.04 -0.02 -0.05 -0.02 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ -0.00 0.01 0.01 -0.00 0.02 0.07 -0.02 0.07 0.09 0.06 0.08 0.11 0.02 -0.01 0.04 0.06 -0.01 -0.02 0.04 0.02 -0.01 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.00 0.01 0.02 0.03 -0.02 0.07 -0.02 -0.02 0.00 -0.05 -0.01 0.01 0.03 0.07 -0.03 0.12 0.08 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.03 -0.04 0.03 -0.03 0.06 -0.00 -0.01 0.03 -0.02 -0.01 0.01 -0.01 -0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 486

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 389

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages