Detailed information of deep learning profile BP000418.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000418.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR908TBJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.19 0.10 0.06 0.14 0.08 0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3780 3387 3178 4390 6038 4234 3046 3990 2838 3534 4254 4406 4082 4076 3536 2468 3586 5004 1489 672 10424 1316 2511 12915 208 3946 1926 770 1815 3767 5222 2918 3353 4999 3663 4600 3837 4264 3977 4085 4320 4562 4056 4185 4300 4230 4232 4278 4267 4290 ]
C [ 3653 2617 3901 5111 3332 3212 2544 3800 7275 5945 4927 4184 4034 3750 4639 5470 3850 1901 13057 15047 977 8735 6101 329 63 165 915 729 2172 8143 2674 6084 4431 3525 3379 3254 3366 3939 4302 4670 4215 3673 3964 3771 3742 3885 3831 3856 3885 3856 ]
G [ 3950 5280 5686 2790 3443 3782 3191 3433 2281 2565 3210 3638 3412 3105 3643 2254 4922 6175 817 239 1600 5512 1081 1771 15746 11547 9289 13447 10218 1850 6170 4117 2852 4476 4169 3742 5384 4120 4193 3322 3602 4015 4009 4018 4089 3791 3900 4024 4105 4023 ]
T [ 4796 4895 3414 3888 3366 4951 7398 4956 3785 4135 3788 3951 4651 5248 4361 5987 3821 3099 816 221 3178 616 6486 1164 162 521 4049 1233 1974 2419 2113 3060 5543 3179 4968 4583 3592 3856 3707 4102 4042 3929 4150 4205 4048 4273 4216 4021 3922 4010 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.03 -0.02 0.03 -0.01 -0.04 0.05 -0.03 -0.02 0.11 -0.07 0.02 -0.06 -0.06 -0.05 -0.01 0.01 -0.02 -0.01 0.02 -0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.03 0.14 0.20 -0.04 0.12 0.05 -0.04 -0.05 -0.10 -0.02 -0.04 -0.03 0.09 -0.00 0.04 0.03 0.02 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.04 0.05 -0.05 -0.05 0.06 0.05 -0.05 0.02 0.20 0.14 0.10 0.16 0.10 -0.02 0.09 0.02 -0.01 0.02 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.03 -0.01 -0.02 -0.06 -0.10 -0.03 -0.08 0.07 -0.05 -0.05 -0.06 0.01 -0.04 -0.00 -0.03 -0.04 -0.01 0.02 -0.02 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 453

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 227

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages