Detailed information of deep learning profile BP000418.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000418.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR908TBJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 0.00 0.08 0.14 0.06 0.10 0.19 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.12 -0.00 0.01 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4010 3922 4021 4216 4273 4048 4205 4150 3929 4042 4102 3707 3856 3592 4583 4968 3179 5543 3060 2113 2419 1974 1233 4049 521 162 1164 6486 616 3178 221 816 3099 3821 5987 4361 5248 4651 3951 3788 4135 3785 4956 7398 4951 3366 3888 3414 4895 4796 ]
C [ 4023 4105 4024 3900 3791 4089 4018 4009 4015 3602 3322 4193 4120 5384 3742 4169 4476 2852 4117 6170 1850 10218 13447 9289 11547 15746 1771 1081 5512 1600 239 817 6175 4922 2254 3643 3105 3412 3638 3210 2565 2281 3433 3191 3782 3443 2790 5686 5280 3950 ]
G [ 3856 3885 3856 3831 3885 3742 3771 3964 3673 4215 4670 4302 3939 3366 3254 3379 3525 4431 6084 2674 8143 2172 729 915 165 63 329 6101 8735 977 15047 13057 1901 3850 5470 4639 3750 4034 4184 4927 5945 7275 3800 2544 3212 3332 5111 3901 2617 3653 ]
T [ 4290 4267 4278 4232 4230 4300 4185 4056 4562 4320 4085 3977 4264 3837 4600 3663 4999 3353 2918 5222 3767 1815 770 1926 3946 208 12915 2511 1316 10424 672 1489 5004 3586 2468 3536 4076 4082 4406 4254 3534 2838 3990 3046 4234 6038 4390 3178 3387 3780 ]

Hypothetical CWM

   
A [ 0.02 -0.02 0.02 -0.01 -0.04 -0.03 -0.00 -0.04 0.01 -0.06 -0.05 -0.05 0.07 -0.08 -0.03 -0.10 -0.06 -0.02 -0.01 0.03 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.02 -0.01 0.02 0.09 -0.02 0.10 0.16 0.10 0.14 0.20 0.02 -0.05 0.05 0.06 -0.05 -0.05 0.05 0.04 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.02 0.03 0.04 -0.00 0.09 -0.03 -0.04 -0.02 -0.10 -0.05 -0.04 0.05 0.12 -0.04 0.20 0.14 -0.03 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.05 -0.06 -0.06 0.02 -0.07 0.11 -0.02 -0.03 0.05 -0.04 -0.01 0.03 -0.02 -0.03 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 453

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 227

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages