Detailed information of deep learning profile BP000413.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000413.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR881YFU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.04 0.01 0.01 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.20 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3670 5013 6334 4659 3735 4194 3743 3957 4561 4640 4700 4818 4316 2934 4280 5036 2074 829 11882 1448 3103 15166 294 7044 1328 381 567 3092 7443 1818 2823 6532 3265 5517 4051 4786 4193 4052 4829 5916 3965 4816 4933 5326 5014 4848 4896 4902 4843 4621 ]
C [ 4747 5628 4076 3792 3304 4670 7160 6302 5654 5258 4959 4436 4903 6115 4039 2299 13842 17476 1171 9723 7179 495 63 187 691 115 1001 13084 1228 9372 6151 4526 3938 3553 3481 4959 6111 7007 5936 3936 5130 4345 4278 4340 4363 4589 4747 4665 4639 4823 ]
G [ 6029 3768 4474 4613 4360 4440 3281 3692 4251 4450 4347 4020 4628 3079 6029 7934 1511 265 2890 6908 1598 1828 18314 11373 10635 18032 15671 882 9057 5489 2022 5509 4931 4109 7854 5125 4747 3006 3209 4975 5100 5212 5026 4349 4470 5157 5093 5001 4814 4958 ]
T [ 4379 4416 3941 5761 7426 5521 4641 4874 4359 4477 4819 5551 4978 6697 4477 3556 1398 255 2882 746 6945 1336 154 221 6171 297 1586 1767 1097 2146 7829 2258 6691 5646 3439 3955 3774 4760 4851 3998 4630 4452 4588 4810 4978 4231 4089 4257 4529 4423 ]

Hypothetical CWM

   
A [ 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.05 -0.04 -0.02 0.10 -0.06 0.07 -0.07 -0.05 -0.05 -0.01 0.03 -0.02 -0.03 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.06 0.04 -0.01 0.13 0.20 -0.02 0.13 0.07 -0.00 -0.03 -0.08 -0.00 -0.06 -0.03 0.15 -0.02 0.08 0.06 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.02 0.00 0.04 0.06 -0.02 -0.03 0.08 0.06 -0.02 0.03 0.20 0.15 0.12 0.20 0.15 -0.02 0.15 0.06 -0.01 0.04 0.03 0.00 0.05 0.02 ]
T [ 0.01 0.02 -0.01 -0.01 -0.04 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.09 0.03 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 40

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages