Detailed information of deep learning profile BP000413.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000413.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR881YFU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.20 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.01 0.01 0.04 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4423 4529 4257 4089 4231 4978 4810 4588 4452 4630 3998 4851 4760 3774 3955 3439 5646 6691 2258 7829 2146 1097 1767 1586 297 6171 221 154 1336 6945 746 2882 255 1398 3556 4477 6697 4978 5551 4819 4477 4359 4874 4641 5521 7426 5761 3941 4416 4379 ]
C [ 4958 4814 5001 5093 5157 4470 4349 5026 5212 5100 4975 3209 3006 4747 5125 7854 4109 4931 5509 2022 5489 9057 882 15671 18032 10635 11373 18314 1828 1598 6908 2890 265 1511 7934 6029 3079 4628 4020 4347 4450 4251 3692 3281 4440 4360 4613 4474 3768 6029 ]
G [ 4823 4639 4665 4747 4589 4363 4340 4278 4345 5130 3936 5936 7007 6111 4959 3481 3553 3938 4526 6151 9372 1228 13084 1001 115 691 187 63 495 7179 9723 1171 17476 13842 2299 4039 6115 4903 4436 4959 5258 5654 6302 7160 4670 3304 3792 4076 5628 4747 ]
T [ 4621 4843 4902 4896 4848 5014 5326 4933 4816 3965 5916 4829 4052 4193 4786 4051 5517 3265 6532 2823 1818 7443 3092 567 381 1328 7044 294 15166 3103 1448 11882 829 2074 5036 4280 2934 4316 4818 4700 4640 4561 3957 3743 4194 3735 4659 6334 5013 3670 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.03 -0.09 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.04 -0.01 -0.01 0.02 0.01 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.01 0.06 0.15 -0.02 0.15 0.20 0.12 0.15 0.20 0.03 -0.02 0.06 0.08 -0.03 -0.02 0.06 0.04 0.00 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.06 0.08 -0.02 0.15 -0.03 -0.06 -0.00 -0.08 -0.03 -0.00 0.07 0.13 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.03 -0.02 0.03 -0.01 -0.05 -0.05 -0.07 0.07 -0.06 0.10 -0.02 -0.04 0.05 -0.03 -0.01 0.02 -0.02 -0.03 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 40

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages