Detailed information of deep learning profile BP000391.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000391.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR829HTO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5340 5172 5253 6194 5939 5641 5507 5690 4882 6074 5917 4613 4893 4225 6665 7897 2811 9302 2617 1432 2273 2013 523 7909 245 194 1525 8428 713 3242 216 1544 4202 5475 8499 6104 6877 5870 5443 5442 5966 5644 6906 9510 7156 4795 5219 5261 6525 6621 ]
C [ 6034 6298 6330 5413 5390 5936 6269 6276 6277 3980 3730 5730 6208 9501 5136 6100 6838 3006 7069 10990 1319 18753 21635 12086 14185 22406 2157 2028 8092 4193 242 1710 9900 7542 3575 5780 4746 5187 5512 5179 4200 3858 5337 5099 5534 5465 4462 7604 7664 5830 ]
G [ 5846 5782 5582 5456 5255 5379 5476 6366 4781 7097 8629 7412 6286 4329 4537 4962 5526 7378 10985 1686 15653 1456 413 1406 230 147 769 8968 12724 1218 21597 17596 2713 4953 7732 6061 5412 6081 6436 7012 7999 9263 5584 4054 4634 4926 7184 5871 4361 5502 ]
T [ 5887 5855 5942 6044 6523 6151 5855 4775 7167 5956 4831 5352 5720 5052 6769 4148 7932 3421 2436 8999 3862 885 536 1706 8447 360 18656 3683 1578 14454 1052 2257 6292 5137 3301 5162 6072 5969 5716 5474 4942 4342 5280 4444 5783 7921 6242 4371 4557 5154 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.01 0.00 -0.03 0.02 -0.06 -0.03 -0.03 0.04 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.03 0.00 0.02 0.02 -0.00 0.04 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.02 0.02 -0.04 -0.01 0.00 0.05 0.10 -0.01 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.01 0.02 -0.01 -0.03 -0.04 -0.05 0.04 -0.04 0.07 -0.01 -0.02 0.03 -0.01 -0.00 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages