Detailed information of deep learning profile BP000391.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000391.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR829HTO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5154 4557 4371 6242 7921 5783 4444 5280 4342 4942 5474 5716 5969 6072 5162 3301 5137 6292 2257 1052 14454 1578 3683 18656 360 8447 1706 536 885 3862 8999 2436 3421 7932 4148 6769 5052 5720 5352 4831 5956 7167 4775 5855 6151 6523 6044 5942 5855 5887 ]
C [ 5502 4361 5871 7184 4926 4634 4054 5584 9263 7999 7012 6436 6081 5412 6061 7732 4953 2713 17596 21597 1218 12724 8968 769 147 230 1406 413 1456 15653 1686 10985 7378 5526 4962 4537 4329 6286 7412 8629 7097 4781 6366 5476 5379 5255 5456 5582 5782 5846 ]
G [ 5830 7664 7604 4462 5465 5534 5099 5337 3858 4200 5179 5512 5187 4746 5780 3575 7542 9900 1710 242 4193 8092 2028 2157 22406 14185 12086 21635 18753 1319 10990 7069 3006 6838 6100 5136 9501 6208 5730 3730 3980 6277 6276 6269 5936 5390 5413 6330 6298 6034 ]
T [ 6621 6525 5261 5219 4795 7156 9510 6906 5644 5966 5442 5443 5870 6877 6104 8499 5475 4202 1544 216 3242 713 8428 1525 194 245 7909 523 2013 2273 1432 2617 9302 2811 7897 6665 4225 4893 4613 5917 6074 4882 5690 5507 5641 5939 6194 5253 5172 5340 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.00 -0.01 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.05 -0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.01 0.10 0.05 0.00 -0.01 -0.04 0.02 -0.02 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.10 0.04 -0.00 0.02 0.02 0.00 0.03 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.04 -0.03 -0.03 -0.06 0.02 -0.03 0.00 -0.01 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages