Detailed information of deep learning profile BP000379.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000379.1
Cell line/tissue: nephron progenitor cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR799GJD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3965 3449 3279 4900 6350 4489 3351 4116 3341 3674 4309 4282 4546 4698 3959 2784 3837 4965 1783 484 11522 1367 2867 14740 229 6421 1359 298 568 2979 6737 1937 2720 6148 3209 5068 3907 4711 3962 3905 4816 5439 3869 4472 4742 4880 4715 4567 4534 4493 ]
C [ 4198 3102 4512 5639 3764 3465 2979 4429 7331 6335 5487 5149 4729 4149 4749 5759 3881 2069 13581 16979 1100 9189 7068 416 68 133 597 101 817 12451 1357 8919 5780 4240 3609 3474 3463 4645 5528 6427 5267 4014 4785 4190 4093 4287 4268 4336 4571 4459 ]
G [ 4458 6143 6089 3240 4143 4172 3874 4015 2821 3182 3995 4201 4009 3670 4437 2788 5820 7557 1327 222 2347 6714 1403 1590 17463 11134 10303 17277 15016 743 8526 4987 1934 5248 4769 3998 7183 4739 4815 3005 3313 4683 4813 4874 4674 4158 4189 4859 4770 4749 ]
T [ 5273 5200 4014 4115 3637 5768 7690 5334 4401 4703 4103 4262 4610 5377 4749 6563 4356 3303 1203 209 2925 624 6556 1148 134 206 5635 218 1493 1721 1274 2051 7460 2258 6307 5354 3341 3799 3589 4557 4498 3758 4427 4358 4385 4569 4722 4132 4019 4193 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.04 -0.06 -0.05 -0.05 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.11 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.03 0.16 0.12 0.10 0.16 0.11 -0.03 0.11 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 -0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 157

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages