Detailed information of deep learning profile BP000379.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000379.1
Cell line/tissue: nephron progenitor cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR799GJD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4193 4019 4132 4722 4569 4385 4358 4427 3758 4498 4557 3589 3799 3341 5354 6307 2258 7460 2051 1274 1721 1493 218 5635 206 134 1148 6556 624 2925 209 1203 3303 4356 6563 4749 5377 4610 4262 4103 4703 4401 5334 7690 5768 3637 4115 4014 5200 5273 ]
C [ 4749 4770 4859 4189 4158 4674 4874 4813 4683 3313 3005 4815 4739 7183 3998 4769 5248 1934 4987 8526 743 15016 17277 10303 11134 17463 1590 1403 6714 2347 222 1327 7557 5820 2788 4437 3670 4009 4201 3995 3182 2821 4015 3874 4172 4143 3240 6089 6143 4458 ]
G [ 4459 4571 4336 4268 4287 4093 4190 4785 4014 5267 6427 5528 4645 3463 3474 3609 4240 5780 8919 1357 12451 817 101 597 133 68 416 7068 9189 1100 16979 13581 2069 3881 5759 4749 4149 4729 5149 5487 6335 7331 4429 2979 3465 3764 5639 4512 3102 4198 ]
T [ 4493 4534 4567 4715 4880 4742 4472 3869 5439 4816 3905 3962 4711 3907 5068 3209 6148 2720 1937 6737 2979 568 298 1359 6421 229 14740 2867 1367 11522 484 1783 4965 3837 2784 3959 4698 4546 4282 4309 3674 3341 4116 3351 4489 6350 4900 3279 3449 3965 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 -0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.11 -0.03 0.11 0.16 0.10 0.12 0.16 0.03 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.05 -0.05 -0.06 0.04 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 157

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages