Detailed information of deep learning profile BP000366.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000366.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR763VUL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.18 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4643 4732 4478 4391 4529 5290 5081 4704 4667 4850 4238 5138 5074 4049 4226 3691 6077 7091 2302 8323 2195 1161 1684 1636 242 6598 235 187 1584 7437 778 2994 261 1661 3627 4697 7004 5264 5736 4972 4774 4627 5135 5072 5706 7709 6084 4327 4692 4665 ]
C [ 5233 5056 5212 5233 5344 4585 4565 5231 5391 5320 5303 3360 3069 4928 5422 8165 4216 5063 5866 2145 5884 9568 743 16878 19121 11155 11542 19138 1950 1809 7136 3123 329 1646 8323 6305 3273 4935 4247 4686 4757 4441 3902 3512 4624 4489 4719 4768 3961 6108 ]
G [ 4971 4890 4980 4994 4774 4676 4465 4532 4627 5366 4106 6111 7340 6347 5189 3523 3790 4164 4658 6429 9906 1006 14281 799 76 753 158 87 557 7132 10217 1253 18236 14156 2536 4252 6425 5066 4645 5109 5407 5860 6495 7280 4962 3638 4100 4229 5812 5094 ]
T [ 4920 5089 5097 5149 5120 5216 5656 5300 5082 4231 6120 5158 4284 4443 4930 4388 5684 3449 6941 2870 1782 8032 3059 454 328 1261 7832 355 15676 3389 1636 12397 941 2304 5281 4513 3065 4502 5139 5000 4829 4839 4235 3903 4475 3931 4864 6443 5302 3900 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.03 0.01 -0.04 0.03 -0.08 -0.03 -0.03 0.06 -0.06 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.02 0.05 0.00 0.03 0.04 0.00 0.06 0.15 -0.02 0.15 0.19 0.12 0.14 0.19 0.04 -0.00 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.03 0.02 0.01 0.02 0.02 0.04 0.05 0.08 -0.02 0.15 -0.02 -0.04 0.02 -0.05 -0.02 0.02 0.06 0.13 -0.00 0.19 0.13 -0.00 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.04 -0.07 0.06 -0.04 0.09 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1275

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 818

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 576

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 99

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages