Detailed information of deep learning profile BP000366.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000366.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR763VUL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.18 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3900 5302 6443 4864 3931 4475 3903 4235 4839 4829 5000 5139 4502 3065 4513 5281 2304 941 12397 1636 3389 15676 355 7832 1261 328 454 3059 8032 1782 2870 6941 3449 5684 4388 4930 4443 4284 5158 6120 4231 5082 5300 5656 5216 5120 5149 5097 5089 4920 ]
C [ 5094 5812 4229 4100 3638 4962 7280 6495 5860 5407 5109 4645 5066 6425 4252 2536 14156 18236 1253 10217 7132 557 87 158 753 76 799 14281 1006 9906 6429 4658 4164 3790 3523 5189 6347 7340 6111 4106 5366 4627 4532 4465 4676 4774 4994 4980 4890 4971 ]
G [ 6108 3961 4768 4719 4489 4624 3512 3902 4441 4757 4686 4247 4935 3273 6305 8323 1646 329 3123 7136 1809 1950 19138 11542 11155 19121 16878 743 9568 5884 2145 5866 5063 4216 8165 5422 4928 3069 3360 5303 5320 5391 5231 4565 4585 5344 5233 5212 5056 5233 ]
T [ 4665 4692 4327 6084 7709 5706 5072 5135 4627 4774 4972 5736 5264 7004 4697 3627 1661 261 2994 778 7437 1584 187 235 6598 242 1636 1684 1161 2195 8323 2302 7091 6077 3691 4226 4049 5074 5138 4238 4850 4667 4704 5081 5290 4529 4391 4478 4732 4643 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.09 -0.04 0.06 -0.07 -0.04 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.00 0.13 0.19 -0.00 0.13 0.06 0.02 -0.02 -0.05 0.02 -0.04 -0.02 0.15 -0.02 0.08 0.05 0.04 0.02 0.02 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.00 0.04 0.19 0.14 0.12 0.19 0.15 -0.02 0.15 0.06 0.00 0.04 0.03 0.00 0.05 0.02 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.06 0.06 -0.03 -0.03 -0.08 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1275

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 818

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 576

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 99

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages