Detailed information of deep learning profile BP000365.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000365.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR757DFT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4695 4194 4105 5561 7172 5150 4083 4819 3968 4389 5063 5137 5238 5412 4614 3020 4709 5724 2111 793 13341 1600 3456 16570 404 7570 1572 530 902 3564 7981 2287 3236 7118 3774 5892 4681 5271 4857 4628 5414 6427 4510 5364 5522 5866 5486 5415 5484 5406 ]
C [ 4866 3849 5201 6244 4336 4179 3627 4948 8061 7087 6153 5631 5316 4762 5380 6777 4511 2467 15496 19370 1193 11117 7459 558 99 198 871 288 1309 13909 1552 9922 6375 4886 4329 4006 3812 5329 6509 7318 6238 4340 5607 4862 4768 4639 4812 4958 5156 5110 ]
G [ 5210 6688 6647 3984 4800 4863 4555 4751 3482 3829 4632 4930 4761 4300 5151 3246 6631 8748 1599 298 3144 7240 1661 2079 19998 12644 11655 19413 16606 1174 9707 5902 2521 5971 5197 4531 8169 5512 5134 3438 3641 5454 5492 5455 5284 4772 4790 5451 5371 5290 ]
T [ 5913 5953 4731 4895 4376 6492 8419 6166 5173 5379 4836 4986 5369 6210 5539 7641 4833 3745 1478 223 3006 727 8108 1477 183 272 6586 453 1867 2037 1444 2573 8552 2709 7384 6255 4022 4572 4184 5300 5391 4463 5075 5003 5110 5407 5596 4860 4673 4878 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.05 0.06 -0.08 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.02 0.14 0.20 -0.03 0.14 0.06 -0.00 -0.02 -0.07 0.00 -0.05 -0.03 0.14 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.05 0.07 -0.03 -0.03 0.09 0.06 -0.02 0.03 0.20 0.14 0.12 0.19 0.14 -0.03 0.14 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.10 -0.03 -0.06 0.07 -0.04 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 174

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages