Detailed information of deep learning profile BP000365.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000365.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR757DFT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4878 4673 4860 5596 5407 5110 5003 5075 4463 5391 5300 4184 4572 4022 6255 7384 2709 8552 2573 1444 2037 1867 453 6586 272 183 1477 8108 727 3006 223 1478 3745 4833 7641 5539 6210 5369 4986 4836 5379 5173 6166 8419 6492 4376 4895 4731 5953 5913 ]
C [ 5290 5371 5451 4790 4772 5284 5455 5492 5454 3641 3438 5134 5512 8169 4531 5197 5971 2521 5902 9707 1174 16606 19413 11655 12644 19998 2079 1661 7240 3144 298 1599 8748 6631 3246 5151 4300 4761 4930 4632 3829 3482 4751 4555 4863 4800 3984 6647 6688 5210 ]
G [ 5110 5156 4958 4812 4639 4768 4862 5607 4340 6238 7318 6509 5329 3812 4006 4329 4886 6375 9922 1552 13909 1309 288 871 198 99 558 7459 11117 1193 19370 15496 2467 4511 6777 5380 4762 5316 5631 6153 7087 8061 4948 3627 4179 4336 6244 5201 3849 4866 ]
T [ 5406 5484 5415 5486 5866 5522 5364 4510 6427 5414 4628 4857 5271 4681 5892 3774 7118 3236 2287 7981 3564 902 530 1572 7570 404 16570 3456 1600 13341 793 2111 5724 4709 3020 4614 5412 5238 5137 5063 4389 3968 4819 4083 5150 7172 5561 4105 4194 4695 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.04 0.07 -0.06 -0.03 -0.10 -0.04 -0.02 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.05 0.14 -0.03 0.14 0.19 0.12 0.14 0.20 0.03 -0.02 0.06 0.09 -0.03 -0.03 0.07 0.05 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.01 0.14 -0.03 -0.05 0.00 -0.07 -0.02 -0.00 0.06 0.14 -0.03 0.20 0.14 -0.02 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.08 0.06 -0.05 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1522

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 174

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages