Detailed information of deep learning profile BP000362.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000362.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR756KRS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.06 0.10 0.03 0.04 0.11 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.11 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4004 4014 4102 5313 4960 4669 4435 4526 3581 4810 4510 3473 3657 3293 5289 6434 1898 7400 1702 933 1619 1547 294 6716 159 107 753 6773 399 1934 84 950 3219 4260 7936 5021 6012 4663 4089 3912 4994 4596 5919 9105 6299 3391 4245 3907 5486 5426 ]
C [ 5078 5162 5567 4216 4005 4648 5220 5097 5307 2643 2450 4201 5138 8279 4173 5320 5440 2168 5899 9233 841 15736 18017 10518 11105 18452 1338 1268 5975 2824 72 892 8503 7047 2448 4962 3744 4151 4281 4009 3010 2570 4221 4012 4577 4613 3003 7072 7063 4846 ]
G [ 4973 4791 4571 4335 4096 4448 4512 5529 3513 6506 8125 6767 5498 3297 3620 3842 4624 6675 9296 1092 13775 954 223 707 137 74 510 7910 11662 596 18468 15352 1788 3788 6159 4528 4102 5015 5655 6353 7203 8613 4524 2654 3394 3760 6499 4884 3028 4724 ]
T [ 4770 4858 4585 4961 5764 5060 4658 3673 6424 4866 3740 4384 4532 3956 5743 3229 6863 2582 1928 7567 2590 588 291 884 7424 192 16224 2874 789 13471 201 1631 5315 3730 2282 4314 4967 4996 4800 4551 3618 3046 4161 3054 4555 7061 5078 2962 3248 3829 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.01 0.00 -0.02 0.01 -0.05 -0.03 -0.03 0.04 -0.04 -0.02 -0.05 -0.02 -0.01 0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.01 -0.01 0.02 0.07 -0.02 0.07 0.10 0.06 0.08 0.11 0.02 -0.01 0.03 0.05 -0.01 -0.02 0.03 0.02 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.00 0.01 0.02 0.03 -0.02 0.07 -0.02 -0.02 0.00 -0.04 -0.01 -0.00 0.03 0.07 -0.02 0.11 0.08 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.00 -0.03 -0.03 -0.04 0.04 -0.04 0.06 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.01 -0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 131

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages